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LOC127273536 NANOG hESC enhancer GRCh37_chr2:65584660-65585161 [ Homo sapiens (human) ]

Gene ID: 127273536, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127273536
Gene description
NANOG hESC enhancer GRCh37_chr2:65584660-65585161
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer associates with the NANOG transcription factor. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127273536 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (65357526..65358027)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (65367210..65367711)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (65584660..65585161)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:65454846-65455734 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15927 Neighboring gene actin related protein 2 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_58697 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:65502227-65502894 Neighboring gene uncharacterized LOC124907781 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:65522924-65523106 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15928 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15929 Neighboring gene sprouty related EVH1 domain containing 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15930 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:65604858-65605439 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15931 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15932 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:65614878-65615414 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15933 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15934 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15935 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15936 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:65647515-65648016 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:65648017-65648516 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11579 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11580 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11581 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11582 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11583 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:65663730-65663888 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:65664483-65665289 Neighboring gene uncharacterized LOC105374780 Neighboring gene uncharacterized LOC124907784

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_095387.1 

    Range
    101..602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    65357526..65358027
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    65367210..65367711
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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