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Ccr10 C-C motif chemokine receptor 10 [ Mus musculus (house mouse) ]

Gene ID: 12777, updated on 9-Dec-2024

Summary

Official Symbol
Ccr10provided by MGI
Official Full Name
C-C motif chemokine receptor 10provided by MGI
Primary source
MGI:MGI:1096320
See related
Ensembl:ENSMUSG00000044052 AllianceGenome:MGI:1096320
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gpr2; CCR-10; Cmkbr9; CC-CKR-10; C-C CKR-10
Summary
Enables C-C chemokine receptor activity. Acts upstream of or within chemotaxis and positive regulation of cytosolic calcium ion concentration. Predicted to be located in cell surface; endoplasmic reticulum; and plasma membrane. Predicted to be active in external side of plasma membrane. Orthologous to human CCR10 (C-C motif chemokine receptor 10). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Broad expression in colon adult (RPKM 12.4), duodenum adult (RPKM 11.6) and 16 other tissues See more
Orthologs
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Genomic context

See Ccr10 in Genome Data Viewer
Location:
11 D; 11 64.34 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (101063824..101066269, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (101172998..101175443, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene tubulin, gamma 2 Neighboring gene pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 Neighboring gene contactin associated protein-like 1 Neighboring gene enhancer of zeste 1 polycomb repressive complex 2 subunit Neighboring gene receptor (calcitonin) activity modifying protein 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (3)  1 citation

Pathways from PubChem

General gene information

Markers

Clone Names

  • MGC151420

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables C-C chemokine binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables C-C chemokine receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables C-C chemokine receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables chemokine receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in calcium-mediated signaling IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cell chemotaxis IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in chemokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within chemotaxis IDA
Inferred from Direct Assay
more info
PubMed 
involved_in immune response IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of cytosolic calcium ion concentration IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within positive regulation of cytosolic calcium ion concentration IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 
located_in cell surface ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 

General protein information

Preferred Names
C-C chemokine receptor type 10
Names
G protein-coupled receptor 2
chemokine (C-C motif) receptor 10
chemokine C-C receptor 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_007721.4NP_031747.2  C-C chemokine receptor type 10

    See identical proteins and their annotated locations for NP_031747.2

    Status: VALIDATED

    Source sequence(s)
    AK090044
    Consensus CDS
    CCDS25454.1
    UniProtKB/Swiss-Prot
    Q542A4, Q9JIP1, Q9JL20, Q9JL21
    Related
    ENSMUSP00000062588.4, ENSMUST00000062759.4
    Conserved Domains (1) summary
    pfam00001
    Location:58235
    7tm_1; 7 transmembrane receptor (rhodopsin family)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    101063824..101066269 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)