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LOC127816653 H3K4me1 hESC enhancer GRCh37_chr9:137573474-137573993 [ Homo sapiens (human) ]

Gene ID: 127816653, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127816653
Gene description
H3K4me1 hESC enhancer GRCh37_chr9:137573474-137573993
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127816653 in Genome Data Viewer
Location:
chromosome: 9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (134681628..134682147)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (146899987..146900506)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (137573474..137573993)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100506532 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137385020-137385642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137410305-137410805 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137414037-137414741 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137430547-137431179 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137437101-137437866 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137444755-137445276 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137445277-137445797 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137446661-137447263 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29285 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137481596-137482127 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137486667-137487168 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137494155-137495067 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137495068-137495979 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137518819-137519400 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137519401-137519982 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137534628-137535334 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137536590-137537174 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137539157-137539956 Neighboring gene uncharacterized LOC124902300 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137540681-137541180 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137547506-137548369 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137546641-137547505 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137549426-137550233 Neighboring gene COL5A1 antisense RNA 1 Neighboring gene collagen type V alpha 1 chain Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137571911-137572432 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137572433-137572952 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137572953-137573473 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137580636-137581426 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137589714-137590538 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137590539-137591361 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137600147-137600714 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137615715-137616537 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137643183-137643695 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137642670-137643182 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:137644538-137644744 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29286 Neighboring gene uncharacterized LOC124902301 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:137665167-137665668 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:137669421-137669566 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137670079-137670688 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137676102-137677054 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137696519-137697019 Neighboring gene uncharacterized LOC101448202 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137733985-137734819 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137737131-137737631 Neighboring gene microRNA 3689c

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_118144.1 

    Range
    101..620
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    134681628..134682147
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    146899987..146900506
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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