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LOC127818200 H3K4me1 hESC enhancer GRCh37_chr10:71721094-71721594 [ Homo sapiens (human) ]

Gene ID: 127818200, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127818200
Gene description
H3K4me1 hESC enhancer GRCh37_chr10:71721094-71721594
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127818200 in Genome Data Viewer
Location:
chromosome: 10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (69961338..69961838)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (70829840..70830340)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (71721094..71721594)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902444 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:71566529-71567728 Neighboring gene uncharacterized LOC105378347 Neighboring gene collagen type XIII alpha 1 chain Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71602109-71602610 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:71620307-71621012 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:71626613-71627596 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:71627597-71628580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71633165-71633944 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71641515-71642236 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71662663-71663262 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71664255-71664755 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2437 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3494 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71676315-71676994 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71685663-71686162 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71706107-71706606 Neighboring gene uncharacterized LOC107984242 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2438 Neighboring gene long intergenic non-protein coding RNA 2636 Neighboring gene macroH2A.2 histone Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71830815-71831314 Neighboring gene HNF4 motif-containing MPRA enhancer 70 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3495 Neighboring gene AIF family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_119673.1 

    Range
    101..601
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    69961338..69961838
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    70829840..70830340
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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