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LOC127821949 H3K4me1 hESC enhancer GRCh37_chr11:71183373-71184280 [ Homo sapiens (human) ]

Gene ID: 127821949, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127821949
Gene description
H3K4me1 hESC enhancer GRCh37_chr11:71183373-71184280
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127821949 in Genome Data Viewer
Location:
chromosome: 11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (71472327..71473234)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (71399288..71400195)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene 7-dehydrocholesterol reductase Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:71159471-71159972 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5166 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5167 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3709 Neighboring gene DHCR7 divergent transcript Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71164405-71164906 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71164907-71165406 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:71169226-71169406 Neighboring gene NAD synthetase 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71184281-71185187 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71187723-71188302 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71188303-71188882 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71188883-71189462 Neighboring gene microRNA 6754 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:71191463-71191988 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71196200-71196700 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:71198988-71199758 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71211789-71212476 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:71216417-71217007 Neighboring gene S100A11 pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_123393.1 

    Range
    101..1008
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    71472327..71473234
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    71399288..71400195
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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