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LOC127822732 H3K4me1 hESC enhancer GRCh37_chr11:118810343-118811124 [ Homo sapiens (human) ]

Gene ID: 127822732, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127822732
Gene description
H3K4me1 hESC enhancer GRCh37_chr11:118810343-118811124
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127822732 in Genome Data Viewer
Location:
chromosome: 11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (118939634..118940415)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (118959884..118960665)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (118810343..118811124)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene BCL9 like Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:118781595-118782134 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:118782402-118783601 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5609 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:118784843-118785382 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:118785383-118785924 Neighboring gene microRNA 4492 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:118787549-118788090 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:118788631-118789172 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:118792419-118792959 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:118794043-118794583 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:118794584-118795123 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5610 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:118795793-118796294 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3957 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3958 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3959 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:118798447-118798948 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5611 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5612 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5613 Neighboring gene RNA, 7SL, cytoplasmic 688, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:118811125-118811904 Neighboring gene uroplakin 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:118842491-118842991 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:118850851-118851369 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:118851370-118851887 Neighboring gene forkhead box R1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_124172.1 

    Range
    101..882
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    118939634..118940415
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    118959884..118960665
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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