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LOC127827120 H3K4me1 hESC enhancer GRCh37_chr13:114506713-114507271 [ Homo sapiens (human) ]

Gene ID: 127827120, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127827120
Gene description
H3K4me1 hESC enhancer GRCh37_chr13:114506713-114507271
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127827120 in Genome Data Viewer
Location:
chromosome: 13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (113803740..113804298)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (113011790..113012425)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (114506713..114507271)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114305936-114306560 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114306561-114307185 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114311832-114312332 Neighboring gene ATPase H+/K+ transporting subunit beta Neighboring gene G protein-coupled receptor kinase 1 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:114426222-114426826 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114426827-114427432 Neighboring gene basic salivary proline-rich protein 4-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114446225-114446726 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:114456174-114456392 Neighboring gene long intergenic non-protein coding RNA 552 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114461359-114461860 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114462417-114462918 Neighboring gene transmembrane protein 255B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114491163-114491692 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114491693-114492221 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114504133-114505007 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8042 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8041 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8040 Neighboring gene uncharacterized LOC124903220 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114523566-114524115 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114524665-114525213 Neighboring gene GAS6 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8043 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114540573-114541125 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114541680-114542232 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114542404-114542980 Neighboring gene growth arrest specific 6 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114551447-114552070 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114552071-114552692 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114555417-114555918 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114555919-114556418 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114556794-114557508 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114557509-114558222 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114563503-114564094 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5551 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114566463-114567054 Neighboring gene GAS6 divergent transcript

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_128624.1 

    Range
    101..659
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    113803740..113804298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    113011790..113012425
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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