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LOC127830023 H3K4me1 hESC enhancer GRCh37_chr15:70473513-70474096 [ Homo sapiens (human) ]

Gene ID: 127830023, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127830023
Gene description
H3K4me1 hESC enhancer GRCh37_chr15:70473513-70474096
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127830023 in Genome Data Viewer
Location:
chromosome: 15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (70181174..70181757)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (68003384..68003961)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (70473513..70474096)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene TLE family member 3, transcriptional corepressor Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:70371265-70371871 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:70374946-70375494 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70380981-70381568 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6602 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6603 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6604 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr15:70390514-70391488 Neighboring gene VISTA enhancer hs359 Neighboring gene microRNA 629 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6607 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70402651-70403162 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:70403675-70404186 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70404187-70404696 Neighboring gene Sharpr-MPRA regulatory region 6929 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9671 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9672 Neighboring gene uncharacterized LOC107984734 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:70432131-70432636 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:70433141-70433644 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70472929-70473512 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70479256-70479756 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70482961-70483463 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:70488483-70489266 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9675 Neighboring gene RNA, U6 small nuclear 745, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70505448-70506324 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70542989-70543572 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9677 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6608 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9678 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9679 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9680 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9681 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70558987-70559640 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9682 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70561356-70562034 Neighboring gene Sharpr-MPRA regulatory region 9099 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70584795-70585294 Neighboring gene uncharacterized LOC105370878

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_131505.1 

    Range
    101..684
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    70181174..70181757
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    68003384..68003961
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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