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LOC127886302 H3K4me1 hESC enhancer GRCh37_chr17:25867223-25868022 [ Homo sapiens (human) ]

Gene ID: 127886302, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127886302
Gene description
H3K4me1 hESC enhancer GRCh37_chr17:25867223-25868022
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127886302 in Genome Data Viewer
Location:
chromosome: 17
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (27540197..27540996)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (28481670..28482469)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (25867223..25868022)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 3 pseudogene 5 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:25783139-25783640 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8328 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:25787154-25787857 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:25788561-25789264 Neighboring gene Sharpr-MPRA regulatory region 12448 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11901 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:25798863-25799627 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:25799628-25800392 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11903 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11902 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:25802427-25802940 Neighboring gene Sharpr-MPRA regulatory region 12304 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:25806167-25806668 Neighboring gene kinase suppressor of ras 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11904 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11905 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr17:25830813-25832012 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:25833398-25833995 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:25838597-25839125 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:25840412-25841256 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:25841257-25842099 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:25846538-25847174 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:25859917-25860102 Neighboring gene MSANTD3 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:25865210-25866051 Neighboring gene uncharacterized LOC124903960 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:25869832-25870332 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:25870333-25870833 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8329 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:25894115-25895067 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:25896821-25897581 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11908 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:25917327-25917828 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:25917829-25918328 Neighboring gene integral membrane protein 2B pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:25957839-25958656 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:25964969-25965523 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:25970104-25970797 Neighboring gene galectin 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_136026.1 

    Range
    101..900
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    27540197..27540996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    28481670..28482469
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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