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LOC127891301 H3K4me1 hESC enhancer GRCh37_chr19:35928409-35929370 [ Homo sapiens (human) ]

Gene ID: 127891301, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127891301
Gene description
H3K4me1 hESC enhancer GRCh37_chr19:35928409-35929370
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127891301 in Genome Data Viewer
Location:
chromosome: 19
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (35437507..35438468)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (37982240..37983201)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1531 Neighboring gene RNA, 7SL, cytoplasmic 491, pseudogene Neighboring gene uncharacterized LOC101927522 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr19:35923796-35924995 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:35927445-35928408 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14478 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14479 Neighboring gene free fatty acid receptor 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14480 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10526 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14481 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:35959455-35960028 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:35961751-35962324 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10527 Neighboring gene keratinocyte differentiation associated protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_141175.1 

    Range
    101..1062
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    35437507..35438468
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    37982240..37983201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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