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LOC128316956 NANOG hESC enhancer GRCh37_chrY:10044179-10044680 [ Homo sapiens (human) ]

Gene ID: 128316956, updated on 10-Oct-2023

Summary

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Gene symbol
LOC128316956
Gene description
NANOG hESC enhancer GRCh37_chrY:10044179-10044680
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer associates with the NANOG transcription factor. [provided by RefSeq, Jan 2023]
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Genomic context

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See LOC128316956 in Genome Data Viewer
Location:
chromosome: Y
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (10206570..10207071)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (10525698..10526199)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrY:10042185-10043105 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrY:10043106-10044025 Neighboring gene NANOG hESC enhancer GRCh37_chrY:10066524-10067025 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrY:10067975-10068955 Neighboring gene NANOG hESC enhancer GRCh37_chrY:10070642-10071143 Neighboring gene RNA, 5.8S ribosomal pseudogene 6 Neighboring gene RNA, 18S ribosomal pseudogene 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrY:13137114-13137752 Neighboring gene uncharacterized LOC100419952 Neighboring gene CDRT15 pseudogene 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_149559.1 

    Range
    101..602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

    Range
    10206570..10207071
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060948.1 Alternate T2T-CHM13v2.0

    Range
    10525698..10526199
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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