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BARX2 BARX homeobox 2 [ Malaclemys terrapin pileata ]

Gene ID: 128849153, updated on 25-Mar-2024

Summary

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Gene symbol
BARX2
Gene description
BARX homeobox 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Malaclemys terrapin pileata (sub-species: pileata)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Malaclemys
Orthologs
human mouse all
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Genomic context

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See BARX2 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current rMalTer1.hap1 (GCF_027887155.1) 15 NC_071519.1 (22054895..22104449)

Chromosome 15 - NC_071519.1Genomic Context describing neighboring genes Neighboring gene Fli-1 proto-oncogene, ETS transcription factor Neighboring gene potassium inwardly rectifying channel subfamily J member 1 Neighboring gene potassium inwardly rectifying channel subfamily J member 5 Neighboring gene Rho GTPase activating protein 32 Neighboring gene transmembrane protein 45B-like Neighboring gene transmembrane protein 45B-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_071519.1 Chromosome 15 Reference rMalTer1.hap1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein BarH-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027887155.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rMalTer1.hap1

Genomic

  1. NC_071519.1 Reference rMalTer1.hap1

    Range
    22054895..22104449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054049535.1 → XP_053905510.1  homeobox protein BarH-like 2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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