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MAGEB17-AS1 MAGEB17 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 128966703, updated on 12-Sep-2024

Summary

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Official Symbol
MAGEB17-AS1provided by HGNC
Official Full Name
MAGEB17 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:56739
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
lnc-AP1S2-2
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Genomic context

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See MAGEB17-AS1 in Genome Data Viewer
Location:
Xp22.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (16153100..16168679, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (15736003..15751583, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (16171223..16186802, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chrX:15961157-15961364 Neighboring gene RNA, U5F small nuclear 7, pseudogene Neighboring gene SET pseudogene 15 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:16060812-16061354 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:16065714-16066214 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chrX:16094875-16095376 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29452 Neighboring gene Sharpr-MPRA regulatory region 9466 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20677 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chrX:16178523-16179722 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:16186339-16187224 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:16197237-16197862 Neighboring gene gastrin releasing peptide receptor Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chrX:16203427-16204626 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:16204620-16205364 Neighboring gene MAGE family member B17 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:16233634-16234454 Neighboring gene ribosomal protein L6 pseudogene 30 Neighboring gene uncharacterized LOC124905249 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29453 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:16464669-16465194 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:16465195-16465720

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Long Non-Coding RNA Landscape in Prostate Cancer Molecular Subtypes: A Feature Selection Approach. De Summa S, et al. Int J Mol Sci, 2021 Feb 23. PMID 33672425, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187144.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078993

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    16153100..16168679 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    15736003..15751583 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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