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DEPDC5 DEP domain containing 5, GATOR1 subcomplex subunit [ Pteronotus mesoamericanus ]

Gene ID: 129087474, updated on 2-Apr-2024

Summary

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Gene symbol
DEPDC5
Gene description
DEP domain containing 5, GATOR1 subcomplex subunit
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteronotus mesoamericanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Mormoopidae; Pteronotus
Orthologs
human mouse all
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Genomic context

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See DEPDC5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
43
Annotation release Status Assembly Chr Location
RS_2024_03 current CSHL_Meso_final (GCF_021234165.1) Unplaced Scaffold NW_026555319.1 (17315880..17407519)

NW_026555319.1Genomic Context describing neighboring genes Neighboring gene SFI1 centrin binding protein Neighboring gene phosphatidylserine decarboxylase Neighboring gene proline rich 14 like Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta Neighboring gene 60S ribosomal protein L17-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026555319 Unplaced Scaffold Reference CSHL_Meso_final

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to amino acid starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of TORC1 signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of GATOR1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GATOR1 complex protein DEPDC5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021234165.1-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CSHL_Meso_final

Genomic

  1. NW_026555319.1 Reference CSHL_Meso_final

    Range
    17315880..17407519
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054594411.1 → XP_054450386.1  GATOR1 complex protein DEPDC5

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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