U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC130003665 ATAC-STARR-seq lymphoblastoid silent region 2293 [ Homo sapiens (human) ]

Gene ID: 130003665, updated on 12-Sep-2024

Summary

Gene symbol
LOC130003665
Gene description
ATAC-STARR-seq lymphoblastoid silent region 2293
Gene type
biological region
Feature type(s)
regulatory: silencer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic sequence represents an accessible chromatin region that was validated as a silencer based on its ability to repress an origin of replication minimal core promoter by the ATAC-STARR-seq (assay for transposase-accessible chromatin with self-transcribing active regulatory region sequencing) massively parallel reporter assay (MPRA) in GM12878 lymphoblastoid cells. [provided by RefSeq, May 2023]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LOC130003665 in Genome Data Viewer
Location:
chromosome: 10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (34717076..34717215)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (34745594..34745733)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (35006004..35006143)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene par-3 family cell polarity regulator Neighboring gene ribosomal protein L37 pseudogene 18 Neighboring gene ribosomal protein S12 pseudogene 16 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:35026216-35026716 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:35067774-35068274 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:35068275-35068775 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3256 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3257 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:35081214-35081916 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:35081917-35082619 Neighboring gene Sharpr-MPRA regulatory region 397 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2294 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2295 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2296 Neighboring gene PARD3 divergent transcript Neighboring gene SS18 like 2 pseudogene 1

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_183111.1 

    Range
    101..240
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    34717076..34717215
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    34745594..34745733
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)