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LOC131378413 STARR-seq mESC enhancer starr_29281 [ Mus musculus (house mouse) ]

Gene ID: 131378413, updated on 10-Feb-2024

Summary

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Gene symbol
LOC131378413
Gene description
STARR-seq mESC enhancer starr_29281
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in metastable (SL) mouse embryonic stem cells, where it was defined as a C1 class enhancer that overlaps an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

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See LOC131378413 in Genome Data Viewer
Location:
chromosome: 11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (44576508..44578104)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:44358832-44358985 Neighboring gene RIKEN cDNA 4930597A21 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:44391554-44391757 Neighboring gene ring finger protein 145 Neighboring gene predicted gene, 51891 Neighboring gene STARR-positive B cell enhancer mm9_chr11:44399542-44399843 Neighboring gene STARR-positive B cell enhancer ABC_E6970 Neighboring gene STARR-positive B cell enhancer mm9_chr11:44449840-44450140 Neighboring gene predicted gene, 39815 Neighboring gene STARR-positive B cell enhancer ABC_E8392 Neighboring gene STARR-positive B cell enhancer ABC_E5217 Neighboring gene early B cell factor 1 Neighboring gene STARR-positive B cell enhancer ABC_E10669 Neighboring gene STARR-seq mESC enhancer starr_29286 Neighboring gene STARR-seq mESC enhancer starr_29287 Neighboring gene STARR-positive B cell enhancer ABC_E1821 Neighboring gene STARR-seq mESC enhancer starr_29288 Neighboring gene STARR-seq mESC enhancer starr_29289 Neighboring gene STARR-seq mESC enhancer starr_29290 Neighboring gene STARR-positive B cell enhancer mm9_chr11:44713071-44713372 Neighboring gene STARR-seq mESC enhancer starr_29291 Neighboring gene STARR-positive B cell enhancer mm9_chr11:44763908-44764208 Neighboring gene STARR-seq mESC enhancer starr_29292 Neighboring gene STARR-positive B cell enhancer ABC_E6972 Neighboring gene STARR-seq mESC enhancer starr_29293 Neighboring gene STARR-seq mESC enhancer starr_29294 Neighboring gene predicted gene, 51859 Neighboring gene predicted gene 12159 Neighboring gene STARR-seq mESC enhancer starr_29295 Neighboring gene tRNA-yW synthesizing tRNA-yW synthesizing pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells. Peng T, et al. Genome Biol, 2020 Sep 10. PMID 32912294, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_218707.1 

    Range
    101..1697
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    44576508..44578104
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version