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NCLIV_056440 Signal recognition particle GTPase, related [ Neospora caninum Liverpool ]

Gene ID: 13446935, updated on 26-Oct-2024

Summary

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Gene symbol
NCLIV_056440
Gene description
Signal recognition particle GTPase, related
Locus tag
NCLIV_056440
See related
ToxoDB:NCLIV_056440; VEuPathDB:NCLIV_056440
Gene type
protein coding
RNA name
Signal recognition particle GTPase, related
RefSeq status
PROVISIONAL
Organism
Neospora caninum Liverpool (strain: Liverpool)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Sarcocystidae; Neospora
Orthologs
Toxoplasma gondii all
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Genomic context

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See NCLIV_056440 in Genome Data Viewer
Location:
chromosome: XI
Exon count:
12
Sequence:
Chromosome: XI; NC_018397.1 (2825433..2831897)

Chromosome XI - NC_018397.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene putative RNA polymerase Rpb3/Rpb11 dimerisation domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_018397.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comprehensive evaluation of Toxoplasma gondii VEG and Neospora caninum LIV genomes with tachyzoite stage transcriptome and proteome defines novel transcript features. Ramaprasad A, et al. PLoS One, 2015. PMID 25875305, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 7S RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables endoplasmic reticulum signal peptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in SRP-dependent cotranslational protein targeting to membrane, translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of signal recognition particle, endoplasmic reticulum targeting IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Signal recognition particle GTPase, related

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_018397.1 Reference assembly

    Range
    2825433..2831897
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003885199.1 → XP_003885248.1  Signal recognition particle GTPase, related [Neospora caninum Liverpool]

    See identical proteins and their annotated locations for XP_003885248.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    F0VNC4
    Conserved Domains (4) summary
    TIGR01425
    Location:2 → 499
    SRP54_euk; signal recognition particle protein SRP54
    pfam00448
    Location:175 → 366
    SRP54; SRP54-type protein, GTPase domain
    pfam02881
    Location:6 → 56
    SRP54_N; SRP54-type protein, helical bundle domain
    pfam02978
    Location:400 → 498
    SRP_SPB; Signal peptide binding domain
Nucleotide Protein
Heading Accession and Version

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