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LOC136351165 alkylbase DNA glycosidase-like protein mag2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 136351165, updated on 10-Oct-2024

Summary

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Gene symbol
LOC136351165
Gene description
alkylbase DNA glycosidase-like protein mag2
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC136351165 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (28440661..28441828, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356557 Neighboring gene uncharacterized LOC4339642 Neighboring gene protein RADIALIS-like 3 Neighboring gene sugar transporter ERD6-like 4 Neighboring gene sugar transporter ERD6-like 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_089039.1 Chromosome 5 Reference ASM3414082v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-3-methyladenine glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-7-methylguanine glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alkylated DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA alkylation repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in base-excision repair, AP site formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of protein-DNA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkylbase DNA glycosidase-like protein mag2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    28440661..28441828 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066310616.1 → XP_066166713.1  alkylbase DNA glycosidase-like protein mag2

    UniProtKB/TrEMBL
    B9FI65, Q688W2
Nucleotide Protein
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Gene LinkOut

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