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D016_gp1 polyprotein [ Aydin-like pestivirus ]

Gene ID: 13791644, updated on 18-Aug-2023

Summary

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Gene symbol
D016_gp1
Gene description
polyprotein
Locus tag
D016_gp1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aydin-like pestivirus (strain: Aydin/04-TR, nat-host: sheep)
Lineage
Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Pestivirus
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Genomic context

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Sequence:
NC_018713.1 (378..12065)

NC_018713.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_018713.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete genome sequence of a novel pestivirus from sheep. Becher P, et al. J Virol, 2012 Oct. PMID 22997427, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
polyprotein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_018713.1 Reference assembly

    Range
    378..12065
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_006860588.1 polyprotein [Aydin-like pestivirus]

    See identical proteins and their annotated locations for YP_006860588.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0B5CTQ6, J9ZZK6
    Conserved Domains (10) summary
    cd00046
    Location:1813 → 1939
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd01699
    Location:3416 → 3704
    RNA_dep_RNAP; RNA_dep_RNAP: RNA-dependent RNA polymerase (RdRp) is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage. RdRp catalyzes synthesis of the RNA strand complementary to a given RNA template. RdRps of many viruses are ...
    pfam00271
    Location:1984 → 2097
    Helicase_C; Helicase conserved C-terminal domain
    pfam05550
    Location:1 → 168
    Peptidase_C53; Pestivirus Npro endopeptidase C53
    pfam05578
    Location:1587 → 1797
    Peptidase_S31; Pestivirus NS3 polyprotein peptidase S31
    pfam11889
    Location:170 → 218
    DUF3409; Domain of unknown function (DUF3409)
    pfam12387
    Location:1320 → 1519
    Peptidase_C74; Pestivirus NS2 peptidase
    pfam16329
    Location:694 → 1027
    Pestivirus_E2; Pestivirus envelope glycoprotein E2
    cl00208
    Location:296 → 354
    RNase_T2; Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf ...
    cl01133
    Location:1039 → 1278
    Na_H_Exchanger; Sodium/hydrogen exchanger family
Protein Accession Links
GenPept Link UniProtKB Link
AFS63897.1

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