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CyHV2_ORF54 protein ORF54 [ Cyprinid herpesvirus 2 ]

Gene ID: 14011449, updated on 20-Nov-2023

Summary

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Gene symbol
CyHV2_ORF54
Gene description
protein ORF54
Locus tag
CyHV2_ORF54
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cyprinid herpesvirus 2 (strain: ST-J1, acronym: CyHV-2, nat-host: Carassius auratus)
Lineage
Viruses; dsDNA viruses, no RNA stage; Herpesvirales; Alloherpesviridae; Cyprinivirus
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Genomic context

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Sequence:
NC_019495.1 (83015..86709, complement)

NC_019495.1Genomic Context describing neighboring genes Neighboring gene protein ORF49 Neighboring gene protein ORF50 Neighboring gene protein ORF51 Neighboring gene protein ORF52 Neighboring gene protein ORF53 Neighboring gene thymidine kinase Neighboring gene protein ORF56

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_019495.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics of carp herpesviruses. Davison AJ, et al. J Virol, 2013 Mar. PMID 23269803, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

regulatory

  • Loc: c83020-83015 regulatory_class = polyA_signal_sequence

General protein information

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Preferred Names
protein ORF54

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_019495.1 Reference assembly

    Range
    83015..86709 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_007003875.1 protein ORF54 [Cyprinid herpesvirus 2]

    See identical proteins and their annotated locations for YP_007003875.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0E3X8Z8, K7PBZ8
    Conserved Domains (1) summary
    cl17238
    Location:565 → 609
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
Nucleotide Protein
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Gene LinkOut

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Other Literature Sources
Molecular Biology Databases