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LOC145845 uncharacterized LOC145845 [ Homo sapiens (human) ]

Gene ID: 145845, updated on 17-Sep-2024

Summary

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Gene symbol
LOC145845
Gene description
uncharacterized LOC145845
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC145845 in Genome Data Viewer
Location:
15q14
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (36864443..36886533, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (34669899..34691987, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (37156644..37178734, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene CDAN1 interacting nuclease 1 Neighboring gene casein kinase 1 alpha 1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9195 Neighboring gene small nucleolar RNA U3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:37169875-37170652 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:37170653-37171430 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:37172643-37173204 Neighboring gene NANOG hESC enhancer GRCh37_chr15:37173676-37174246 Neighboring gene NANOG hESC enhancer GRCh37_chr15:37190004-37190592 Neighboring gene NANOG hESC enhancer GRCh37_chr15:37190593-37191179 Neighboring gene Meis homeobox 2 Neighboring gene VISTA enhancer hs181 Neighboring gene microRNA 8063 Neighboring gene Sharpr-MPRA regulatory region 4521 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr15:37337602-37338196 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr15:37338197-37338789 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:37386941-37387802 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6294 Neighboring gene uncharacterized LOC124903465 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6295 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9196 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9197 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6296 Neighboring gene NANOG hESC enhancer GRCh37_chr15:37398796-37399337

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024264.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AC018563, AK023254, BC133673, DA774274

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    36864443..36886533 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    34669899..34691987 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001101327.1: Suppressed sequence

    Description
    NM_001101327.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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