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LOC149684 uncharacterized LOC149684 [ Homo sapiens (human) ]

Gene ID: 149684, updated on 17-Sep-2024

Summary

Gene symbol
LOC149684
Gene description
uncharacterized LOC149684
See related
Ensembl:ENSG00000285347
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in ovary (RPKM 1.3), kidney (RPKM 0.9) and 13 other tissues See more
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Genomic context

See LOC149684 in Genome Data Viewer
Location:
20q11.23
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (38260175..38288947)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (39986325..40015106)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (36888577..36917349)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:36770637-36771306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:36771307-36771975 Neighboring gene transglutaminase 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12897 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr20:36845917-36847116 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:36847531-36848032 Neighboring gene KIAA1755 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:36874844-36875344 Neighboring gene uncharacterized LOC124904900 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:36881371-36881963 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:36888895-36889394 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12898 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:36915021-36915522 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:36926779-36927294 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr20:36962737-36963936 Neighboring gene bactericidal permeability increasing protein Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:36970603-36971380 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:36972161-36972938 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:36982312-36982872 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:36982873-36983432 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:36986777-36987278 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:36991245-36991414 Neighboring gene lipopolysaccharide binding protein

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104170.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK055854, AW000952, AW451313
    Related
    ENST00000479646.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    38260175..38288947
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    39986325..40015106
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)