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Ucn2 urocortin 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 170896, updated on 10-Jul-2024

Summary

Official Symbol
Ucn2provided by RGD
Official Full Name
urocortin 2provided by RGD
Primary source
RGD:620765
See related
EnsemblRapid:ENSRNOG00000020579 AllianceGenome:RGD:620765
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Ucn3
Summary
Enables corticotropin-releasing hormone receptor 2 binding activity. Involved in several processes, including cellular response to glucocorticoid stimulus; cellular response to hypoxia; and negative regulation of gonadotropin secretion. Located in extracellular space. Biomarker of colitis. Human ortholog(s) of this gene implicated in hypertension. Orthologous to human UCN2 (urocortin 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Adrenal (RPKM 2.2), Uterus (RPKM 1.6) and 6 other tissues See more
Orthologs
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Genomic context

See Ucn2 in Genome Data Viewer
Location:
8q32
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (118516111..118517660)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (109637624..109639173)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (117727216..117728765)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene ubiquinol-cytochrome c reductase core protein 1 Neighboring gene collagen type VII alpha 1 chain Neighboring gene microRNA 711 Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 Neighboring gene uncharacterized LOC100911671 Neighboring gene uncharacterized LOC134480237

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables G protein-coupled receptor binding ISO
Inferred from Sequence Orthology
more info
 
enables corticotropin-releasing hormone receptor 2 binding IEA
Inferred from Electronic Annotation
more info
 
enables corticotropin-releasing hormone receptor 2 binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables corticotropin-releasing hormone receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables corticotropin-releasing hormone receptor binding ISO
Inferred from Sequence Orthology
more info
 
enables corticotropin-releasing hormone receptor binding ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
enables hormone activity IEA
Inferred from Electronic Annotation
more info
 
enables hormone binding IEA
Inferred from Electronic Annotation
more info
 
enables hormone binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in adenylate cyclase-activating G protein-coupled receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in adenylate cyclase-activating G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in adenylate cyclase-activating G protein-coupled receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to glucocorticoid stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to hypoxia IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to nutrient levels IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in digestion IEA
Inferred from Electronic Annotation
more info
 
involved_in hormone-mediated signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in hormone-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in hormone-mediated signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of follicle-stimulating hormone secretion IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of luteinizing hormone secretion IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in response to immobilization stress IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in tissue regeneration TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
urocortin-2
Names
ucn II
urocortin 3
urocortin II

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133385.2NP_596876.2  urocortin-2 precursor

    See identical proteins and their annotated locations for NP_596876.2

    Status: VALIDATED

    Source sequence(s)
    AI454706, EF078966, JAXUCZ010000008
    UniProtKB/Swiss-Prot
    Q91WW1
    UniProtKB/TrEMBL
    A1YKY4, A6I398
    Related
    ENSRNOP00000028031.3, ENSRNOT00000028031.6
    Conserved Domains (1) summary
    pfam00473
    Location:72107
    CRF; Corticotropin-releasing factor family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    118516111..118517660
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)