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Vmn1r16 vomeronasal 1 receptor 16 [ Mus musculus (house mouse) ]

Gene ID: 171202, updated on 9-Aug-2024

Summary

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Official Symbol
Vmn1r16provided by MGI
Official Full Name
vomeronasal 1 receptor 16provided by MGI
Primary source
MGI:MGI:2159465
See related
Ensembl:ENSMUSG00000115792 AllianceGenome:MGI:2159465
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
V1rc29
Summary
Predicted to enable pheromone binding activity and pheromone receptor activity. Predicted to act upstream of or within response to pheromone. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See Vmn1r16 in Genome Data Viewer
Location:
6 B3; 6 27.82 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (57297724..57300620, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (57320739..57323635, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor, pseudogene 9 Neighboring gene vomeronasal 1 receptor, pseudogene 10 Neighboring gene STARR-seq mESC enhancer starr_16000 Neighboring gene vomeronasal 1 receptor 17 Neighboring gene vomeronasal 1 receptor 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors. Rodriguez I, et al. Nat Neurosci, 2002 Feb. PMID 11802169
  2. Manual annotation and analysis of the defensin gene cluster in the C57BL/6J mouse reference genome. Amid C, et al. BMC Genomics, 2009 Dec 15. PMID 20003482, Free PMC Article
  3. Extreme variability among mammalian V1R gene families. Young JM, et al. Genome Res, 2010 Jan. PMID 19952141, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables pheromone binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables pheromone receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
acts_upstream_of_or_within response to pheromone ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
vomeronasal 1 receptor, C29
Names
vomernasal 1 receptor Vmn1r16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_134184.2 → NP_598945.2  vomeronasal 1 receptor, C29

    See identical proteins and their annotated locations for NP_598945.2

    Status: VALIDATED

    Source sequence(s)
    AC098739
    Consensus CDS
    CCDS20179.1
    UniProtKB/TrEMBL
    K7N775, Q8R2C5
    Related
    ENSMUSP00000154001.2, ENSMUST00000227168.2
    Conserved Domains (1) summary
    pfam03402
    Location:29 → 293
    V1R; Vomeronasal organ pheromone receptor family, V1R

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    57297724..57300620 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017321426.1 → XP_017176915.1  vomeronasal 1 receptor, C29 isoform X1

    UniProtKB/TrEMBL
    Q8R2C5
    Conserved Domains (2) summary
    cd14964
    Location:6 → 28
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:6 → 292
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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