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Ppp5c protein phosphatase 5, catalytic subunit [ Mus musculus (house mouse) ]

Gene ID: 19060, updated on 9-Dec-2024

Summary

Official Symbol
Ppp5cprovided by MGI
Official Full Name
protein phosphatase 5, catalytic subunitprovided by MGI
Primary source
MGI:MGI:102666
See related
Ensembl:ENSMUSG00000003099 AllianceGenome:MGI:102666
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
PP5
Summary
Enables RNA binding activity and phosphoprotein phosphatase activity. Acts upstream of or within response to morphine. Located in cytosol. Orthologous to human PPP5C (protein phosphatase 5 catalytic subunit). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Ubiquitous expression in colon adult (RPKM 54.8), cerebellum adult (RPKM 52.9) and 28 other tissues See more
Orthologs
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Genomic context

See Ppp5c in Genome Data Viewer
Location:
7 A2; 7 9.15 cM
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (16738575..16761812, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (17004640..17027914, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:17575492-17575675 Neighboring gene PNMA family member 8C Neighboring gene coiled-coil domain containing 8 Neighboring gene hypoxia inducible factor 3, alpha subunit Neighboring gene STARR-seq mESC enhancer starr_18149 Neighboring gene pregnancy specific beta-1-glycoprotein 16 Neighboring gene predicted gene 45219

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ADP binding ISO
Inferred from Sequence Orthology
more info
PubMed 
enables ATP binding ISO
Inferred from Sequence Orthology
more info
PubMed 
enables G-protein alpha-subunit binding ISO
Inferred from Sequence Orthology
more info
 
enables Hsp90 protein binding IEA
Inferred from Electronic Annotation
more info
 
enables Hsp90 protein binding ISO
Inferred from Sequence Orthology
more info
 
enables MAP kinase serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
enables RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables RNA polymerase II CTD heptapeptide repeat S2 phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
enables RNA polymerase II CTD heptapeptide repeat S5 phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
enables RNA polymerase II CTD heptapeptide repeat S7 phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
enables RNA polymerase II CTD heptapeptide repeat T4 phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
enables RNA polymerase II CTD heptapeptide repeat Y1 phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
enables calmodulin-dependent protein phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
enables heat shock protein binding ISO
Inferred from Sequence Orthology
more info
 
enables histone H2AXS140 phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables microtubule binding ISO
Inferred from Sequence Orthology
more info
 
enables myosin phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
enables phosphatase activity ISO
Inferred from Sequence Orthology
more info
 
enables phosphoprotein phosphatase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables phosphoprotein phosphatase activity ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein serine/threonine phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein serine/threonine phosphatase activity ISO
Inferred from Sequence Orthology
more info
 
enables protein serine/threonine phosphatase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables protein-containing complex binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of protein phosphorylation ISO
Inferred from Sequence Orthology
more info
 
involved_in peptidyl-serine dephosphorylation ISO
Inferred from Sequence Orthology
more info
 
involved_in peptidyl-serine dephosphorylation ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of glucocorticoid receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
involved_in response to arachidonate ISO
Inferred from Sequence Orthology
more info
 
involved_in response to lead ion ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within response to morphine IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytosol IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in neuronal cell body ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
located_in perikaryon ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
part_of protein folding chaperone complex IEA
Inferred from Electronic Annotation
more info
 
part_of protein folding chaperone complex ISO
Inferred from Sequence Orthology
more info
 
part_of protein-containing complex ISO
Inferred from Sequence Orthology
more info
PubMed 
located_in proximal dendrite ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
serine/threonine-protein phosphatase 5
Names
ANP receptor
protein phosphatase T
NP_001404084.1
NP_035285.2
XP_006539726.1
XP_017177532.1
XP_030098096.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417155.1NP_001404084.1  serine/threonine-protein phosphatase 5 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC148976
    UniProtKB/TrEMBL
    F7BX26
    Related
    ENSMUSP00000122783.2, ENSMUST00000142597.2
  2. NM_011155.3NP_035285.2  serine/threonine-protein phosphatase 5 isoform 1

    See identical proteins and their annotated locations for NP_035285.2

    Status: VALIDATED

    Source sequence(s)
    AC148976
    Consensus CDS
    CCDS20859.1
    UniProtKB/Swiss-Prot
    G5E819, O35299, Q60676
    UniProtKB/TrEMBL
    F7BX26
    Related
    ENSMUSP00000003183.6, ENSMUST00000003183.12
    Conserved Domains (7) summary
    smart00028
    Location:2861
    TPR; Tetratricopeptide repeats
    smart00156
    Location:204480
    PP2Ac; Protein phosphatase 2A homologues, catalytic domain
    sd00006
    Location:2856
    TPR; TPR repeat [structural motif]
    cd07417
    Location:176491
    MPP_PP5_C; PP5, C-terminal metallophosphatase domain
    pfam00515
    Location:96129
    TPR_1; Tetratricopeptide repeat
    pfam13371
    Location:71134
    TPR_9; Tetratricopeptide repeat
    pfam13414
    Location:2793
    TPR_11; TPR repeat

RNA

  1. NR_184426.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC148976
  2. NR_184427.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC148976

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    16738575..16761812 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017322043.2XP_017177532.1  serine/threonine-protein phosphatase 5 isoform X1

    Conserved Domains (1) summary
    cd07417
    Location:70385
    MPP_PP5_C; PP5, C-terminal metallophosphatase domain
  2. XM_030242236.2XP_030098096.1  serine/threonine-protein phosphatase 5 isoform X1

    Conserved Domains (1) summary
    cd07417
    Location:70385
    MPP_PP5_C; PP5, C-terminal metallophosphatase domain
  3. XM_006539663.5XP_006539726.1  serine/threonine-protein phosphatase 5 isoform X1

    Conserved Domains (1) summary
    cd07417
    Location:70385
    MPP_PP5_C; PP5, C-terminal metallophosphatase domain