Rcn1 reticulocalbin 1 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Rcn1provided by MGI
Official Full Name: reticulocalbin 1provided by MGI
Primary source: MGI:MGI:104559
See related: Ensembl:ENSMUSG00000005973 AllianceGenome:MGI:104559
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Rcn
Summary: Predicted to enable calcium ion binding activity. Acts upstream of or within camera-type eye development and in utero embryonic development. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including body cavity or lining; brain; genitourinary system; spinal cord ventricular layer; and vertebral axis musculature. Orthologous to human RCN1 (reticulocalbin 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Broad expression in limb E14.5 (RPKM 50.5), adrenal adult (RPKM 36.1) and 22 other tissues See more
Orthologs: human all
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Genomic context

Location:: 2 E3; 2 55.18 cM

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	2	NC_000068.8 (105216293..105229664, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	2	NC_000068.7 (105385948..105399319, complement)

Chromosome 2 - NC_000068.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Downregulation of RCN1 promotes pyroptosis in acute myeloid leukemia cells.
Title: Downregulation of RCN1 promotes pyroptosis in acute myeloid leukemia cells.

Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (3)
Targeted (2)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

RH69418 (e-PCR)
- UniSTS:91433

Rcn (e-PCR), detects polymorphism
- UniSTS:144334

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables calcium ion binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within camera-type eye development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within in utero embryonic development	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
is_active_in endoplasmic reticulum	IBA Inferred from Biological aspect of Ancestor more info
located_in endoplasmic reticulum	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: reticulocalbin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_009037.2 → NP_033063.1 reticulocalbin-1 precursor

See identical proteins and their annotated locations for NP_033063.1

Status: VALIDATED

Source sequence(s)

AK017494, AK133971, BB612908

Consensus CDS

CCDS16498.1

UniProtKB/Swiss-Prot

Q05186, Q3TVU3

Related

ENSMUSP00000006128.7, ENSMUST00000006128.7

Conserved Domains (3) summary

COG5126
Location:62 → 232

FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

cd00051
Location:204 → 267

EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

cl08302
Location:166 → 224

EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...