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Erfl ETS repressor factor like [ Mus musculus (house mouse) ]

Gene ID: 232974, updated on 17-Aug-2024

Summary

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Official Symbol
Erflprovided by MGI
Official Full Name
ETS repressor factor likeprovided by MGI
Primary source
MGI:MGI:3642958
See related
Ensembl:ENSMUSG00000108367 AllianceGenome:MGI:3642958
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm4881; EG232974
Summary
Is expressed in hypothalamus mantle layer; medulla oblongata basal plate mantle layer; and pons mantle layer. Orthologous to human ERFL (ETS repressor factor like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in whole brain E14.5 (RPKM 2.9), CNS E14 (RPKM 2.4) and 6 other tissues See more
Orthologs
human all
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Genomic context

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See Erfl in Genome Data Viewer
Location:
7 A3; 7 13.67 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (24626381..24644255, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (24926956..24944771, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E1723 Neighboring gene CD79A antigen (immunoglobulin-associated alpha) Neighboring gene CapStarr-seq enhancers MGSCv37_chr7:25692211-25692364 and MGSCv37_chr7:25692403-25692604 Neighboring gene Rho guanine nucleotide exchange factor 1 Neighboring gene STARR-positive B cell enhancer ABC_E4904 Neighboring gene predicted gene, 36809 Neighboring gene microRNA 7046 Neighboring gene Rab acceptor 1 (prenylated)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
ETS domain-containing transcription factor ERF-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001370804.2 → NP_001357733.1  ETS domain-containing transcription factor ERF-like

    Status: VALIDATED

    Source sequence(s)
    AC161441
    Consensus CDS
    CCDS90182.1
    UniProtKB/TrEMBL
    A0A140LIR9
    Related
    ENSMUSP00000146932.2, ENSMUST00000206705.3
    Conserved Domains (1) summary
    smart00413
    Location:41 → 123
    ETS; erythroblast transformation specific domain

  2. NM_001395981.1 → NP_001382910.1  ETS domain-containing transcription factor ERF-like

    Status: VALIDATED

    Source sequence(s)
    AC161441
    UniProtKB/TrEMBL
    A0A140LIR9
    Conserved Domains (1) summary
    smart00413
    Location:41 → 123
    ETS; erythroblast transformation specific domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    24626381..24644255 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030242447.1 → XP_030098307.1  ETS domain-containing transcription factor ERF-like isoform X1

    UniProtKB/TrEMBL
    A0A140LIR9
    Conserved Domains (1) summary
    smart00413
    Location:41 → 123
    ETS; erythroblast transformation specific domain

  2. XM_030242445.1 → XP_030098305.1  ETS domain-containing transcription factor ERF-like isoform X1

    UniProtKB/TrEMBL
    A0A140LIR9
    Conserved Domains (1) summary
    smart00413
    Location:41 → 123
    ETS; erythroblast transformation specific domain

  3. XM_030242446.1 → XP_030098306.1  ETS domain-containing transcription factor ERF-like isoform X1

    UniProtKB/TrEMBL
    A0A140LIR9
    Conserved Domains (1) summary
    smart00413
    Location:41 → 123
    ETS; erythroblast transformation specific domain

  4. XM_030242444.1 → XP_030098304.1  ETS domain-containing transcription factor ERF-like isoform X1

    UniProtKB/TrEMBL
    A0A140LIR9
    Conserved Domains (1) summary
    smart00413
    Location:41 → 123
    ETS; erythroblast transformation specific domain

  5. XM_030242442.1 → XP_030098302.1  ETS domain-containing transcription factor ERF-like isoform X1

    UniProtKB/TrEMBL
    A0A140LIR9
    Conserved Domains (1) summary
    smart00413
    Location:41 → 123
    ETS; erythroblast transformation specific domain

  6. XM_030242448.1 → XP_030098308.1  ETS domain-containing transcription factor ERF-like isoform X1

    UniProtKB/TrEMBL
    A0A140LIR9
    Conserved Domains (1) summary
    smart00413
    Location:41 → 123
    ETS; erythroblast transformation specific domain

  7. XM_030242443.1 → XP_030098303.1  ETS domain-containing transcription factor ERF-like isoform X1

    UniProtKB/TrEMBL
    A0A140LIR9
    Conserved Domains (1) summary
    smart00413
    Location:41 → 123
    ETS; erythroblast transformation specific domain
Nucleotide Protein
Heading Accession and Version

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