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RDT1 [ Saccharomyces cerevisiae S288C ]

Gene ID: 23547378, updated on 11-Sep-2024

Summary

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Official Symbol
RDT1
Primary source
SGD:S000178054
Locus tag
YCL054W-A
See related
AllianceGenome:SGD:S000178054; FungiDB:YCL054W-A; VEuPathDB:YCL054W-A
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
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Genomic context

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Location:
chromosome: III
Exon count:
1
Sequence:
Chromosome: III; NC_001135.5 (30910..30996)

Chromosome III - NC_001135.5Genomic Context describing neighboring genes Neighboring gene Pex34p Neighboring gene Kar4p Neighboring gene 27S pre-rRNA (guanosine2922-2'-O)-methyltransferase Neighboring gene Pbn1p

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001135.5

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Putatively noncoding transcripts show extensive association with ribosomes. Wilson BA, et al. Genome Biol Evol, 2011. PMID 21948395, Free PMC Article
  2. The complete DNA sequence of yeast chromosome III. Oliver SG, et al. Nature, 1992 May 7. PMID 1574125
  3. New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources. Engel SR, et al. Genetics, 2022 Apr 4. PMID 34897464, Free PMC Article
  4. Life with 6000 genes. Goffeau A, et al. Science, 1996 Oct 25. PMID 8849441

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Rdt1p
NP_001291943.1
  • Small gene in chromosome III recombination enhancer; activated during mating-type switching; bound by condensin complex, deletion drastically changes chromosome III structure, alters donor preference; promoter functions as locus control region (LCR) that regulates both transcription and long-range chromatin interactions

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001135.5 Reference assembly

    Range
    30910..30996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001305014.1 → NP_001291943.1  TPA: Rdt1p [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_001291943.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A0B7P221
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0B7P221.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials