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SSBP2 single stranded DNA binding protein 2 [ Homo sapiens (human) ]

Gene ID: 23635, updated on 10-Dec-2024

Summary

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Official Symbol
SSBP2provided by HGNC
Official Full Name
single stranded DNA binding protein 2provided by HGNC
Primary source
HGNC:HGNC:15831
See related
Ensembl:ENSG00000145687 MIM:607389; AllianceGenome:HGNC:15831
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HSPC116; SOSS-B2
Summary
This gene encodes a subunit of a protein complex that interacts with single-stranded DNA and is involved in the DNA damage response and maintenance of genome stability. The encoded protein may also play a role in telomere repair. A variant of this gene may be associated with survival in human glioblastoma patients. [provided by RefSeq, Sep 2016]
Expression
Ubiquitous expression in ovary (RPKM 6.2), brain (RPKM 5.5) and 25 other tissues See more
Orthologs
mouse all
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Genomic context

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See SSBP2 in Genome Data Viewer
Location:
5q14.1
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (81412804..81751807, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (81897401..82236409, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (80708623..81047626, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene CKMT2 antisense RNA 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:80564272-80565471 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:80565548-80566100 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:80566101-80566651 Neighboring gene MPRA-validated peak5313 silencer Neighboring gene creatine kinase, mitochondrial 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:80597135-80597924 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:80597925-80598714 Neighboring gene zinc finger CCHC-type containing 9 Neighboring gene acyl-CoA thioesterase 12 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:80728863-80729548 Neighboring gene NANOG hESC enhancer GRCh37_chr5:80746651-80747152 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16141 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:80983594-80984094 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16142 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16143 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16144 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16145 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16146 Neighboring gene CRISPRi-validated cis-regulatory element chr5.2009 Neighboring gene CRISPRi-validated cis-regulatory element chr5.2010 Neighboring gene uncharacterized LOC107986384 Neighboring gene uncharacterized LOC107986385 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22733

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Cigarette smoke induces promoter methylation of single-stranded DNA-binding protein 2 in human esophageal squamous cell carcinoma. Huang Y, et al. Int J Cancer, 2011 May 15. PMID 20658532, Free PMC Article
  2. SSBP2, a candidate tumor suppressor gene, induces growth arrest and differentiation of myeloid leukemia cells. Liang H, et al. Oncogene, 2005 Apr 14. PMID 15782145
  3. SSBP2 variants are associated with survival in glioblastoma patients. Xiao Y, et al. Clin Cancer Res, 2012 Jun 1. PMID 22472174, Free PMC Article
  4. Adenoviral E1B55K oncoprotein sequesters candidate leukemia suppressor sequence-specific single-stranded DNA-binding protein 2 into aggresomes. Fleisig HB, et al. Oncogene, 2007 Jul 19. PMID 17311003
  5. Novel SSBP2-JAK2 fusion gene resulting from a t(5;9)(q14.1;p24.1) in pre-B acute lymphocytic leukemia. Poitras JL, et al. Genes Chromosomes Cancer, 2008 Oct. PMID 18618714

See all (54) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. SSBP2-CSF1R is a recurrent fusion in B-lineage acute lymphoblastic leukemia with diverse genetic presentation and variable outcome.
    Title: SSBP2-CSF1R is a recurrent fusion in B-lineage acute lymphoblastic leukemia with diverse genetic presentation and variable outcome.
  2. The structural details of the interaction of single-stranded DNA binding protein hSSB2 (NABP1/OBFC2A) with UV-damaged DNA.
    Title: The structural details of the interaction of single-stranded DNA binding protein hSSB2 (NABP1/OBFC2A) with UV-damaged DNA.
  3. CcRCC with low SSBP2 expression was associated with adverse clinicopathological characteristics and poor patient outcomes.
    Title: Low Expression of Single-stranded DNA Binding Protein 2 (SSBP2) Predicts Unfavourable Postoperative Outcomes in Patients With Clear Cell Renal Cell Carcinoma.
  4. Single-stranded DNA binding proteins (SSBPs) interact specifically with the LDB/Chip conserved domain (LCCD) of LDB proteins and stabilize LDBs by preventing their proteasomal degradation, thus promoting their functions in gene regulation.
    Title: Crystal structure of human LDB1 in complex with SSBP2.
  5. This study reports a crystal structure of the highly conserved N-terminal LUFS domain of human SSBP2 at 1.52 A resolution.
    Title: Crystal structure of the LUFS domain of human single-stranded DNA binding Protein 2 (SSBP2).
  6. SSBP-2-positive hepatocellular carcinomas were significantly associated with aggressive phenotypes and poor clinical outcome.
    Title: Single-stranded DNA binding protein 2 expression is associated with patient survival in hepatocellular carcinoma.
  7. The minor allele of SSBP2 SNP rs17296479 and the increased tumor expression of SSBP2 were statistically significantly associated with poorer overall survival among glioblastoma patients
    Title: SSBP2 variants are associated with survival in glioblastoma patients.
  8. results indicate that cigarette smoking is a cause of SSBP2 promoter methylation and that SSBP2 harbors a tumor suppressive role in ESCC through inhibition of the Wnt signaling pathway
    Title: Cigarette smoke induces promoter methylation of single-stranded DNA-binding protein 2 in human esophageal squamous cell carcinoma.
  9. Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)
    Title: Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.
  10. ZNF198-FGFR1 is associated with phosphorylation of several proteins including SSBP2, ABL, FLJ14235, CALM and TRIM4 proteins.
    Title: Phosphorylation of the SSBP2 and ABL proteins by the ZNF198-FGFR1 fusion kinase seen in atypical myeloproliferative disorders as revealed by phosphopeptide-specific MS.
Submit: New GeneRIF Correction See all GeneRIFs (15)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.
EBI GWAS Catalog
SSBP2 variants are associated with survival in glioblastoma patients.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • DKFZp686F03273

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables single-stranded DNA binding NAS
Non-traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of DNA-templated transcription NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
single-stranded DNA-binding protein 2
Names
sequence-specific single-stranded-DNA-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_051589.1 RefSeqGene

    Range
    5157..343450
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001256732.3 → NP_001243661.1  single-stranded DNA-binding protein 2 isoform 1

    See identical proteins and their annotated locations for NP_001243661.1

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    Consensus CDS
    CCDS75268.1
    UniProtKB/TrEMBL
    A0A087X159, B7Z4K7
    Related
    ENSP00000483921.1, ENST00000615665.5
    Conserved Domains (2) summary
    smart00667
    Location:19 → 45
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:83 → 346
    SSDP; Single-stranded DNA binding protein, SSDP

  2. NM_001256733.3 → NP_001243662.1  single-stranded DNA-binding protein 2 isoform 3

    See identical proteins and their annotated locations for NP_001243662.1

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    Consensus CDS
    CCDS58963.1
    UniProtKB/TrEMBL
    B7Z4K7
    Related
    ENSP00000423969.1, ENST00000505980.5
    Conserved Domains (2) summary
    smart00667
    Location:19 → 45
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:83 → 318
    SSDP; Single-stranded DNA binding protein, SSDP

  3. NM_001256734.3 → NP_001243663.1  single-stranded DNA-binding protein 2 isoform 4

    See identical proteins and their annotated locations for NP_001243663.1

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    Consensus CDS
    CCDS58962.1
    UniProtKB/TrEMBL
    B7Z4K7
    Related
    ENSP00000424657.1, ENST00000515395.5
    Conserved Domains (2) summary
    smart00667
    Location:19 → 45
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:92 → 316
    SSDP; Single-stranded DNA binding protein, SSDP

  4. NM_001256735.3 → NP_001243664.1  single-stranded DNA-binding protein 2 isoform 5

    See identical proteins and their annotated locations for NP_001243664.1

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    Consensus CDS
    CCDS58961.1
    UniProtKB/TrEMBL
    B7Z4K7
    Related
    ENSP00000426183.1, ENST00000514493.5
    Conserved Domains (2) summary
    smart00667
    Location:19 → 45
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:92 → 308
    SSDP; Single-stranded DNA binding protein, SSDP

  5. NM_001256736.3 → NP_001243665.1  single-stranded DNA-binding protein 2 isoform 6

    See identical proteins and their annotated locations for NP_001243665.1

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    Consensus CDS
    CCDS58960.1
    UniProtKB/TrEMBL
    B7Z4K7
    Related
    ENSP00000422961.1, ENST00000509053.5
    Conserved Domains (2) summary
    smart00667
    Location:19 → 45
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:92 → 297
    SSDP; Single-stranded DNA binding protein, SSDP

  6. NM_001345886.2 → NP_001332815.1  single-stranded DNA-binding protein 2 isoform 7

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    B7Z4K7
    Conserved Domains (2) summary
    smart00667
    Location:19 → 45
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:83 → 335
    SSDP; Single-stranded DNA binding protein, SSDP

  7. NM_001394350.1 → NP_001381279.1  single-stranded DNA-binding protein 2 isoform 8

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    B7Z4K7
    Conserved Domains (1) summary
    smart00667
    Location:19 → 45
    LisH; Lissencephaly type-1-like homology motif

  8. NM_001394351.1 → NP_001381280.1  single-stranded DNA-binding protein 2 isoform 9

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    Q9P038
    Conserved Domains (1) summary
    pfam04503
    Location:79 → 334
    SSDP; Single-stranded DNA binding protein, SSDP

  9. NM_001394352.1 → NP_001381281.1  single-stranded DNA-binding protein 2 isoform 10

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    B7Z4K7
    Conserved Domains (2) summary
    smart00667
    Location:19 → 45
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:83 → 327
    SSDP; Single-stranded DNA binding protein, SSDP

  10. NM_001400340.1 → NP_001387269.1  single-stranded DNA-binding protein 2 isoform 1

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    Consensus CDS
    CCDS75268.1
    UniProtKB/TrEMBL
    A0A087X159, B7Z4K7

  11. NM_001400341.1 → NP_001387270.1  single-stranded DNA-binding protein 2 isoform 11

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    B7Z4K7

  12. NM_001400342.1 → NP_001387271.1  single-stranded DNA-binding protein 2 isoform 2

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    Consensus CDS
    CCDS4056.1
    UniProtKB/Swiss-Prot
    B2R5W1, B7Z1J2, B7Z2L9, B7Z665, D6RH18, E9PB74, E9PDA8, P81877, Q8N2Q2, Q9BWW6, Q9Y4T7
    UniProtKB/TrEMBL
    B7Z4K7

  13. NM_001400343.1 → NP_001387272.1  single-stranded DNA-binding protein 2 isoform 12

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    B7Z4K7

  14. NM_001400344.1 → NP_001387273.1  single-stranded DNA-binding protein 2 isoform 13

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    B7Z4K7

  15. NM_001400345.1 → NP_001387274.1  single-stranded DNA-binding protein 2 isoform 14

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    B7Z4K7

  16. NM_001400346.1 → NP_001387275.1  single-stranded DNA-binding protein 2 isoform 15

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    B7Z4K7

  17. NM_001400347.1 → NP_001387276.1  single-stranded DNA-binding protein 2 isoform 10

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    B7Z4K7

  18. NM_001400348.1 → NP_001387277.1  single-stranded DNA-binding protein 2 isoform 16

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    B7Z4K7

  19. NM_001400349.1 → NP_001387278.1  single-stranded DNA-binding protein 2 isoform 17

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    B7Z4K7

  20. NM_001400350.1 → NP_001387279.1  single-stranded DNA-binding protein 2 isoform 18

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC093250
    UniProtKB/TrEMBL
    B7Z4K7

  21. NM_001400351.1 → NP_001387280.1  single-stranded DNA-binding protein 2 isoform 19

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419
    UniProtKB/TrEMBL
    H0Y9M5

  22. NM_001400352.1 → NP_001387281.1  single-stranded DNA-binding protein 2 isoform 20

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    B7Z4K7

  23. NM_001400353.1 → NP_001387282.1  single-stranded DNA-binding protein 2 isoform 21

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    B7Z4K7

  24. NM_001400354.1 → NP_001387283.1  single-stranded DNA-binding protein 2 isoform 22

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC093250
    UniProtKB/TrEMBL
    B7Z4K7

  25. NM_001400355.1 → NP_001387284.1  single-stranded DNA-binding protein 2 isoform 23

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    B7Z4K7

  26. NM_001400356.1 → NP_001387285.1  single-stranded DNA-binding protein 2 isoform 24

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    H0Y9M5

  27. NM_001400357.1 → NP_001387286.1  single-stranded DNA-binding protein 2 isoform 25

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    B7Z4K7

  28. NM_001400358.1 → NP_001387287.1  single-stranded DNA-binding protein 2 isoform 27

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    B7Z4K7

  29. NM_001400359.1 → NP_001387288.1  single-stranded DNA-binding protein 2 isoform 28

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419
    UniProtKB/TrEMBL
    B7Z4K7

  30. NM_001400360.1 → NP_001387289.1  single-stranded DNA-binding protein 2 isoform 29

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    H0Y9M5
    Related
    ENSP00000425146.1, ENST00000504985.5

  31. NM_001400361.1 → NP_001387290.1  single-stranded DNA-binding protein 2 isoform 30

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    H0Y9M5

  32. NM_001400362.1 → NP_001387291.1  single-stranded DNA-binding protein 2 isoform 30

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    H0Y9M5

  33. NM_001400363.1 → NP_001387292.1  single-stranded DNA-binding protein 2 isoform 30

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    H0Y9M5
    Related
    ENSP00000424561.1, ENST00000512923.5

  34. NM_001400364.1 → NP_001387293.1  single-stranded DNA-binding protein 2 isoform 31

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419

  35. NM_001400366.1 → NP_001387295.1  single-stranded DNA-binding protein 2 isoform 32

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    B7Z4K7

  36. NM_001400367.1 → NP_001387296.1  single-stranded DNA-binding protein 2 isoform 33

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    H0Y9M5

  37. NM_001400368.1 → NP_001387297.1  single-stranded DNA-binding protein 2 isoform 34

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    H0Y9M5

  38. NM_001400369.1 → NP_001387298.1  single-stranded DNA-binding protein 2 isoform 35

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    B7Z4K7

  39. NM_001400371.1 → NP_001387300.1  single-stranded DNA-binding protein 2 isoform 36

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    H0Y9M5

  40. NM_001400374.1 → NP_001387303.1  single-stranded DNA-binding protein 2 isoform 37

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    Q9P038

  41. NM_001400375.1 → NP_001387304.1  single-stranded DNA-binding protein 2 isoform 38

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    UniProtKB/TrEMBL
    B7Z4K7

  42. NM_012446.5 → NP_036578.2  single-stranded DNA-binding protein 2 isoform 2

    See identical proteins and their annotated locations for NP_036578.2

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250
    Consensus CDS
    CCDS4056.1
    UniProtKB/Swiss-Prot
    B2R5W1, B7Z1J2, B7Z2L9, B7Z665, D6RH18, E9PB74, E9PDA8, P81877, Q8N2Q2, Q9BWW6, Q9Y4T7
    UniProtKB/TrEMBL
    B7Z4K7
    Related
    ENSP00000322977.4, ENST00000320672.9
    Conserved Domains (2) summary
    smart00667
    Location:19 → 45
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:83 → 338
    SSDP; Single-stranded DNA binding protein, SSDP

RNA

  1. NR_174525.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  2. NR_174526.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  3. NR_174527.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  4. NR_174528.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC093250

  5. NR_174529.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  6. NR_174530.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  7. NR_174531.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  8. NR_174532.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  9. NR_174533.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  10. NR_174534.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  11. NR_174535.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  12. NR_174536.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  13. NR_174537.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  14. NR_174538.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  15. NR_174539.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419

  16. NR_174540.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  17. NR_174541.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  18. NR_174542.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  19. NR_174543.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  20. NR_174544.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  21. NR_174545.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  22. NR_174546.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  23. NR_174547.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  24. NR_174548.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  25. NR_174549.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  26. NR_174550.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  27. NR_174551.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  28. NR_174552.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  29. NR_174553.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  30. NR_174554.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  31. NR_174555.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  32. NR_174556.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  33. NR_174557.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  34. NR_174558.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  35. NR_174559.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419

  36. NR_174560.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  37. NR_174561.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  38. NR_174562.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

  39. NR_174563.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC010623, AC016562, AC026419, AC093250

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    81412804..81751807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047417066.1 → XP_047273022.1  single-stranded DNA-binding protein 2 isoform X5

    UniProtKB/TrEMBL
    H0Y9M5

  2. XM_047417062.1 → XP_047273018.1  single-stranded DNA-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    H0Y9M5

  3. XM_047417061.1 → XP_047273017.1  single-stranded DNA-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    H0Y9M5

  4. XM_047417060.1 → XP_047273016.1  single-stranded DNA-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    B7Z4K7

  5. XM_047417058.1 → XP_047273014.1  single-stranded DNA-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    Q9P038

  6. XM_047417065.1 → XP_047273021.1  single-stranded DNA-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    H0Y9M5

  7. XM_047417059.1 → XP_047273015.1  single-stranded DNA-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    Q9P038

  8. XM_017009309.2 → XP_016864798.1  single-stranded DNA-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    H0Y9M5
    Conserved Domains (1) summary
    pfam04503
    Location:12 → 234
    SSDP; Single-stranded DNA binding protein, SSDP

  9. XM_017009308.2 → XP_016864797.1  single-stranded DNA-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    H0Y9M5
    Conserved Domains (1) summary
    pfam04503
    Location:12 → 234
    SSDP; Single-stranded DNA binding protein, SSDP

  10. XM_047417064.1 → XP_047273020.1  single-stranded DNA-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    H0Y9M5

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    81897401..82236409 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054352278.1 → XP_054208253.1  single-stranded DNA-binding protein 2 isoform X5

    UniProtKB/TrEMBL
    H0Y9M5

  2. XM_054352274.1 → XP_054208249.1  single-stranded DNA-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    H0Y9M5

  3. XM_054352273.1 → XP_054208248.1  single-stranded DNA-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    H0Y9M5

  4. XM_054352272.1 → XP_054208247.1  single-stranded DNA-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    B7Z4K7

  5. XM_054352271.1 → XP_054208246.1  single-stranded DNA-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    Q9P038

  6. XM_054352275.1 → XP_054208250.1  single-stranded DNA-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    H0Y9M5

  7. XM_054352277.1 → XP_054208252.1  single-stranded DNA-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    H0Y9M5

  8. XM_054352276.1 → XP_054208251.1  single-stranded DNA-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    H0Y9M5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P81877.2 GenPept UniProtKB/Swiss-Prot:P81877

Gene LinkOut

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