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4932414J04Rik RIKEN cDNA 4932414J04 gene [ Mus musculus (house mouse) ]

Gene ID: 237694, updated on 22-Oct-2024

Summary

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Official Symbol
4932414J04Rikprovided by MGI
Official Full Name
RIKEN cDNA 4932414J04 geneprovided by MGI
Primary source
MGI:MGI:3605619
See related
Ensembl:ENSMUSG00000078962 AllianceGenome:MGI:3605619
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 1.2) See more
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Genomic context

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See 4932414J04Rik in Genome Data Viewer
Location:
11 A3.1; 11 13.89 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (21444730..21461180, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (21494730..21511180, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene RAB5C, member RAS oncogene family pseudogene Neighboring gene predicted gene 12046 Neighboring gene STARR-positive B cell enhancer ABC_E6958 Neighboring gene STARR-seq mESC enhancer starr_28848 Neighboring gene STARR-seq mESC enhancer starr_28849 Neighboring gene malate dehydrogenase 1, NAD (soluble) Neighboring gene WD repeat containing planar cell polarity effector Neighboring gene phosphoglycerate mutase 1, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Mutation of Vps54 causes motor neuron disease and defective spermiogenesis in the wobbler mouse. Schmitt-John T, et al. Nat Genet, 2005 Nov. PMID 16244655
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Other Names

  • 4932414J04 protein

Clone Names

  • MGC130366

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028259.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK030001, AL772195
    Related
    ENSMUST00000152483.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    21444730..21461180 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_172792.2: Suppressed sequence

    Description
    NM_172792.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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