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CG42559 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 246505, updated on 18-Sep-2024

Summary

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Official Symbol
CG42559provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0260761
Locus tag
Dmel_CG42559
See related
AllianceGenome:FB:FBgn0260761
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG30182; Dmel\CG42559
Old locus tag
Dmel_CG30182
Orthologs
all
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Genomic context

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See CG42559 in Genome Data Viewer
Location:
59F4-59F4; 2-104 cM
Exon count:
6
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (23599526..23600787, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (19487049..19488310, complement)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Integrin alphaPS5 subunit Neighboring gene Phosphatidylinositol 3-kinase 59F Neighboring gene uncharacterized protein Neighboring gene apontic Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Immune induced molecule 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transient junction anisotropies orient annular cell polarization in the Drosophila airway tubes. Hosono C, et al. Nat Cell Biol, 2015 Dec. PMID 26551273
  2. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article
  3. Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species. Sanfilippo P, et al. Genome Biol, 2017 Nov 30. PMID 29191225, Free PMC Article
  4. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article
  5. The Release 6 reference sequence of the Drosophila melanogaster genome. Hoskins RA, et al. Genome Res, 2015 Mar. PMID 25589440, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG42559-PA
CG42559-PB
CG42559-PC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    23599526..23600787 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_166612.4 → NP_726345.3  uncharacterized protein Dmel_CG42559, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_726345.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q4V3Z6, Q8MLR3
    Conserved Domains (1) summary
    cl19219
    Location:67 → 152
    DUF342; Protein of unknown function (DUF342)

  2. NM_001169798.2 → NP_001163269.1  uncharacterized protein Dmel_CG42559, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001163269.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q4V3Z6, Q8MLR3
    Conserved Domains (1) summary
    cl19219
    Location:67 → 152
    DUF342; Protein of unknown function (DUF342)

  3. NM_001169797.2 → NP_001163268.1  uncharacterized protein Dmel_CG42559, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001163268.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q4V3Z6, Q8MLR3
    Conserved Domains (1) summary
    cl19219
    Location:67 → 152
    DUF342; Protein of unknown function (DUF342)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4V3Z6 Q4V3Z6

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials