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sid1 secreted immunoglobulin domain 1 [ Danio rerio (zebrafish) ]

Gene ID: 246712, updated on 2-Nov-2024

Summary

Official Symbol
sid1provided by ZNC
Official Full Name
secreted immunoglobulin domain 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-020620-1
See related
Ensembl:ENSDARG00000095540 AllianceGenome:ZFIN:ZDB-GENE-020620-1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fe25h07; wu:fe25h07
Summary
Predicted to be involved in response to bacterium. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See sid1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (13616099..13618344, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (13558440..13560685, complement)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene arrestin domain containing 2 Neighboring gene si:ch211-1a19.2 Neighboring gene si:ch211-1a19.3 Neighboring gene WD repeat domain 18

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
secreted immunoglobulin domain 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127332.1NP_001120804.1  secreted immunoglobulin domain 1 precursor

    See identical proteins and their annotated locations for NP_001120804.1

    Status: PROVISIONAL

    Source sequence(s)
    AY127570
    Related
    ENSDARP00000115207.1, ENSDART00000137289.2
    Conserved Domains (2) summary
    cd00099
    Location:30122
    IgV; Immunoglobulin variable domain (IgV)
    smart00410
    Location:29118
    IG_like; Immunoglobulin like

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    13616099..13618344 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)