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yme1 i-AAA protease Yme1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2538746, updated on 22-Jun-2024

Summary

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Gene symbol
yme1
Gene description
i-AAA protease Yme1
Locus tag
SPOM_SPCC965.04C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
ppp36
Old locus tag
SPCC965.04c
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Genomic context

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See yme1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
2
Sequence:
Chromosome: III; NC_003421.2 (2286794..2289320, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene OPT oligopeptide transporter family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene V-type ATPase V1 subunit D Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uracil DNA N-glycosylase Thp1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Schizosaccharomyces pombe PPR protein Ppr10 associates with a novel protein Mpa1 and acts as a mitochondrial translational activator. Wang Y, et al. Nucleic Acids Res, 2017 Apr 7. PMID 28334955, Free PMC Article
  2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity NAS
Non-traceable Author Statement
more info
  
enables ATP-dependent peptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in mitochondrial protein catabolic process TAS
Traceable Author Statement
more info
 PubMed 
involved_in mitochondrion organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein quality control for misfolded or incompletely synthesized proteins IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of i-AAA complex ISO
Inferred from Sequence Orthology
more info
  
is_active_in mitochondrial inner membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
i-AAA protease Yme1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    2286794..2289320 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023503.3 → NP_588514.1  i-AAA protease Yme1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588514.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O59824
    Conserved Domains (4) summary
    TIGR01241
    Location:258 → 698
    FtsH_fam; ATP-dependent metalloprotease FtsH
    pfam00004
    Location:303 → 437
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam01434
    Location:517 → 696
    Peptidase_M41; Peptidase family M41
    cl21455
    Location:266 → 322
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

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