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ist1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539003, updated on 11-Sep-2024

Summary

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Official Symbol
ist1
Primary source
PomBase:SPCC1442.17c
Locus tag
SPOM_SPCC1442.17C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPCC285.02c
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Genomic context

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Location:
chromosome: III
Exon count:
3
Sequence:
Chromosome: III; NC_003421.2 (1796041..1797250, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene adenosine 5'-monophosphoramidase Neighboring gene protein Cox18 Neighboring gene ncRNA Neighboring gene NADPH quinone oxidoreductase/ARE-binding protein Neighboring gene ncRNA Neighboring gene ATP-dependent RNA helicase Dbp6 Neighboring gene ncRNA Neighboring gene transthyretin/hydroxyisourate hydrolase domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in protein localization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus HDA PubMed 
is_active_in cytosol HDA PubMed 
is_active_in endosome ISO
Inferred from Sequence Orthology
more info
  
is_active_in mitotic spindle pole body attachment site EXP
Inferred from Experiment
more info
 PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
MVB sorting pathway protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    1796041..1797250 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001355935.2 → NP_001342769.1  MVB sorting pathway protein [Schizosaccharomyces pombe]

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74490
    Conserved Domains (1) summary
    pfam03398
    Location:7 → 164
    Ist1; Regulator of Vps4 activity in the MVB pathway
Nucleotide Protein
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