U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

tyr1 NADP-dependent prephenate dehydrogenase Tyr1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539274, updated on 22-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
tyr1
Gene description
NADP-dependent prephenate dehydrogenase Tyr1
Locus tag
SPOM_SPCC1494.04C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Old locus tag
SPCC1494.04c
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See tyr1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
2
Sequence:
Chromosome: III; NC_003421.2 (2327041..2328687, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene retrotransposable element/transposon Tf2-type Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene armadillo repeat-containing zfs1 target protein 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene CSN-associated deubiquitinating enzyme Ubp12 Neighboring gene ncRNA Neighboring gene ATP-dependent RNA helicase Dbp9

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Development of a genetic transformation system using new selectable markers for fission yeast Schizosaccharomyces pombe. Fujita Y, et al. Yeast, 2005 Feb. PMID 15704224
  2. Genetic Mapping in SCHIZOSACCHAROMYCES POMBE by Mitotic and Meiotic Analysis and Induced Haploidization. Kohli J, et al. Genetics, 1977 Nov. PMID 17248775, Free PMC Article
  3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables NAD+ binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables NADP binding IEA
Inferred from Electronic Annotation
more info
  
enables prephenate dehydrogenase (NAD+) activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables prephenate dehydrogenase (NAD+) activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables prephenate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in tyrosine biosynthetic process EXP
Inferred from Experiment
more info
 PubMed 
involved_in tyrosine biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in tyrosine biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
NADP-dependent prephenate dehydrogenase Tyr1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    2327041..2328687 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023517.3 → NP_588529.1  NADP-dependent prephenate dehydrogenase Tyr1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588529.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O60078, P78863
    Conserved Domains (2) summary
    COG0287
    Location:2 → 276
    TyrA; Prephenate dehydrogenase [Amino acid transport and metabolism]
    cl21454
    Location:2 → 243
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials