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rnc1 RNA-binding protein Rnc1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539434, updated on 18-Sep-2024

Summary

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Official Symbol
rnc1
Official Full Name
RNA-binding protein Rnc1
Primary source
PomBase:SPCC757.09c
Locus tag
SPOM_SPCC757.09C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See rnc1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
1
Sequence:
Chromosome: III; NC_003421.2 (64099..66962, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene exosome subunit Rrp45 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene transporter Neighboring gene V-ATPase assembly protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Distinct modes of stress granule assembly mediated by the KH-type RNA-binding protein Rnc1. Satoh R, et al. Genes Cells, 2018 Sep. PMID 30014536
  2. In vitro assay of the interaction between Rnc1 protein and Pmp1 mRNA by affinity capillary electrophoresis with a carboxylated capillary. Taga A, et al. J Pharm Biomed Anal, 2010 Dec 15. PMID 20692117
  3. Spatial regulation of the KH domain RNA-binding protein Rnc1 mediated by a Crm1-independent nuclear export system in Schizosaccharomyces pombe. Satoh R, et al. Mol Microbiol, 2017 May. PMID 28142187
  4. Feedback regulation of MAPK signalling by an RNA-binding protein. Sugiura R, et al. Nature, 2003 Aug 21. PMID 12931193
  5. RNA-Binding Protein Rnc1 Regulates Cell Length at Division and Acute Stress Response in Fission Yeast through Negative Feedback Modulation of the Stress-Activated Mitogen-Activated Protein Kinase Pathway. Prieto-Ruiz F, et al. mBio, 2020 Jan 7. PMID 31911490, Free PMC Article

See all (25) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Rnc1 regulates stress granule assembly, dependently or independently of its RNA-binding activity.
    Title: Distinct modes of stress granule assembly mediated by the KH-type RNA-binding protein Rnc1.
  2. The functional Rae1-dependent mRNA export system may influence the cytoplasmic localization and function of Rnc1.
    Title: Spatial regulation of the KH domain RNA-binding protein Rnc1 mediated by a Crm1-independent nuclear export system in Schizosaccharomyces pombe.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables mRNA 3'-UTR AU-rich region binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables mRNA 3'-UTR AU-rich region binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables mRNA 3'-UTR binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables mRNA binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in 3'-UTR-mediated mRNA destabilization EXP
Inferred from Experiment
more info
 PubMed 
involved_in 3'-UTR-mediated mRNA stabilization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in 3'-UTR-mediated mRNA stabilization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of cell integrity MAPK cascade IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of p38MAPK cascade IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytosol HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
RNA-binding protein Rnc1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    64099..66962 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022679.3 → NP_587684.1  RNA-binding protein Rnc1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_587684.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74919
    Conserved Domains (2) summary
    cd00105
    Location:322 → 385
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:181 → 243
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
Nucleotide Protein
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