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tom40 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540506, updated on 11-Sep-2024

Summary

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Official Symbol
tom40
Primary source
PomBase:SPBC27B12.13
Locus tag
SPOM_SPBC27B12.13
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPBC8D2.22
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Genomic context

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Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (1356187..1357927)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene CorA family magnesium ion transporter Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene serine/threonine protein kinase Gsk31 Neighboring gene ncRNA Neighboring gene sorting protein Vps68

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  2. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP hydrolysis activity IC
Inferred by Curator
more info
  
enables protein transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein-transporting ATPase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in protein import into mitochondrial matrix IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein import into mitochondrial matrix ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in protein insertion into mitochondrial inner membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
part_of mitochondrial outer membrane translocase complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
TOM complex subunit Tom40

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1356187..1357927
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021457.4 → NP_595546.2  TOM complex subunit Tom40 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595546.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13655, O13656, Q7Z979, Q9URU0
    Conserved Domains (1) summary
    cd07305
    Location:27 → 324
    Porin3_Tom40; Translocase of outer mitochondrial membrane 40 (Tom40)
Nucleotide Protein
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Gene LinkOut

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