U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ltc2 BAR and PH domain-containing protein [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542216, updated on 14-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
ltc2
Official Full Name
BAR and PH domain-containing protein
Primary source
PomBase:SPAC19A8.02
Locus tag
SPOM_SPAC19A8.02
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
sip3
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ltc2 in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003424.3 (2485083..2489090, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene myotubularin family phosphatidylinositol-3-phosphatase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene guanyl-nucleotide exchange factor Sec73 Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Fission yeast Duc1 links to ER-PM contact sites and influences PM lipid composition and cytokinetic ring anchoring. Willet AH, et al. J Cell Sci, 2024 Sep 15. PMID 39239853, Free PMC Article
  2. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  3. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables lipid binding ISM
Inferred from Sequence Model
more info
  
Process Evidence Code Pubs
involved_in endoplasmic reticulum-plasma membrane tethering ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
NOT is_active_in cell division site IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cortical endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
  
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in endoplasmic reticulum-plasma membrane contact site IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in lateral plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
BAR and PH domain-containing protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2485083..2489090 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019219.3 → NP_593790.1  BAR and PH domain-containing protein [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593790.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13818, Q9USA8
    Conserved Domains (4) summary
    cd07609
    Location:31 → 242
    BAR_SIP3_fungi; The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3
    cd13280
    Location:291 → 394
    PH_SIP3; Snf1p-interacting protein 3 Pleckstrin homology (PH) domain
    pfam00169
    Location:290 → 388
    PH; PH domain
    pfam16016
    Location:779 → 926
    DUF4782; Domain of unknown function (DUF4782)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials