U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

hrp3 CHD family chromatin remodeller Hrp3 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2543064, updated on 22-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
hrp3
Gene description
CHD family chromatin remodeller Hrp3
Locus tag
SPOM_SPAC3G6.01
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Old locus tag
SPAC3G6.01
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See hrp3 in Genome Data Viewer
Location:
chromosome: I
Exon count:
3
Sequence:
Chromosome: I; NC_003424.3 (5377824..5382913)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene U1 snRNP-associated protein Prp40 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene proteasome receptor/ubiquitin ligase adaptor Dss1 Neighboring gene Maf-like protein Ifs1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Chd1 chromatin remodelers maintain nucleosome organization and repress cryptic transcription. Hennig BP, et al. EMBO Rep, 2012 Nov 6. PMID 23032292, Free PMC Article
  2. Interplay between chromatin modulators and histone acetylation regulates the formation of accessible chromatin in the upstream regulatory region of fission yeast fbp1. Adachi A, et al. Genes Genet Syst, 2018 May 3. PMID 28674280
  3. CHD1 remodelers regulate nucleosome spacing in vitro and align nucleosomal arrays over gene coding regions in S. pombe. Pointner J, et al. EMBO J, 2012 Nov 28. PMID 23103765, Free PMC Article
  4. A genome-wide role for CHD remodelling factors and Nap1 in nucleosome disassembly. Walfridsson J, et al. EMBO J, 2007 Jun 20. PMID 17510629, Free PMC Article
  5. The CHD remodeling factor Hrp1 stimulates CENP-A loading to centromeres. Walfridsson J, et al. Nucleic Acids Res, 2005. PMID 15908586, Free PMC Article

See all (25) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. deletion of hrp3 causes accumulation of antisense transcripts and affects nucleosome positioning.
    Title: Chd1 chromatin remodelers maintain nucleosome organization and repress cryptic transcription.
  2. Hrp3 controls nucleosome positioning to suppress non-coding transcription in eu- and heterochromatin
    Title: Hrp3 controls nucleosome positioning to suppress non-coding transcription in eu- and heterochromatin.
  3. S. pombe lacks ISWI-type remodelers but it has two CHD1-type ATPases, Hrp1 and Hrp3
    Title: CHD1 remodelers regulate nucleosome spacing in vitro and align nucleosomal arrays over gene coding regions in S. pombe.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP binding IC
Inferred by Curator
more info
  
enables ATP hydrolysis activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ATP-dependent chromatin remodeler activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ATP-dependent chromatin remodeler activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables histone binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables nucleosome binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome disassembly EXP
Inferred from Experiment
more info
 PubMed 
involved_in nucleosome organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in nucleosome organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in transcription initiation-coupled chromatin remodeling EXP
Inferred from Experiment
more info
 PubMed 
involved_in transcription initiation-coupled chromatin remodeling IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
CHD family chromatin remodeller Hrp3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    5377824..5382913
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001356206.2 → NP_001342861.1  CHD family chromatin remodeller Hrp3 [Schizosaccharomyces pombe]

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O14139
    Conserved Domains (5) summary
    smart00298
    Location:192 → 250
    CHROMO; Chromatin organization modifier domain
    pfam00385
    Location:289 → 340
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam08074
    Location:1123 → 1152
    CHDCT2; CHDCT2 (NUC038) domain
    pfam13907
    Location:1300 → 1384
    DUF4208; Domain of unknown function (DUF4208)
    cl26465
    Location:339 → 895
    SNF2_N; SNF2 family N-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials