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ypt71 GTPase Ypt71 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2543411, updated on 18-Sep-2024

Summary

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Official Symbol
ypt71
Official Full Name
GTPase Ypt71
Primary source
PomBase:SPAPB1A10.10c
Locus tag
SPOM_SPAPB1A10.10C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See ypt71 in Genome Data Viewer
Location:
chromosome: I
Exon count:
3
Sequence:
Chromosome: I; NC_003424.3 (1880698..1881947, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene antiparallel microtubule cross-linking factor Ase1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene glutamyl--tRNA (Glu) ligase Mse1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two fission yeast rab7 homologs, ypt7 and ypt71, play antagonistic roles in the regulation of vacuolar morphology. Kashiwazaki J, et al. Traffic, 2009 Jul. PMID 19453973
  2. Negative regulation of EGFR signalling by the human folliculin tumour suppressor protein. Laviolette LA, et al. Nat Commun, 2017 Jun 28. PMID 28656962, Free PMC Article
  3. The fission yeast FLCN/FNIP complex augments TORC1 repression or activation in response to amino acid (AA) availability. Calvo IA, et al. iScience, 2021 Nov 19. PMID 34805795, Free PMC Article
  4. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data show that the two S. pombe Rab7 homologs, Ypt7 and Ypt71, act antagonistically in regulating vacuolar morphology.
    Title: Two fission yeast rab7 homologs, ypt7 and ypt71, play antagonistic roles in the regulation of vacuolar morphology.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in Golgi to vacuole transport ISO
Inferred from Sequence Orthology
more info
  
involved_in endocytosis ISO
Inferred from Sequence Orthology
more info
  
involved_in intracellular protein transport IC
Inferred by Curator
more info
  
involved_in negative regulation of TORC1 signaling IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of vacuole fusion, non-autophagic IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of vacuole fusion, non-autophagic IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in fungal-type vacuole membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in fungal-type vacuole membrane IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in late endosome IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus HDA PubMed 
is_active_in vacuolar membrane EXP
Inferred from Experiment
more info
 PubMed 
is_active_in vacuole IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
GTPase Ypt71

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    1880698..1881947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018958.3 → NP_593524.1  GTPase Ypt71 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593524.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9HDY0
    Conserved Domains (2) summary
    smart00175
    Location:9 → 179
    RAB; Rab subfamily of small GTPases
    cd01862
    Location:9 → 182
    Rab7; Rab GTPase family 7 (Rab7)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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