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TBC1D29P TBC1 domain family member 29, pseudogene [ Homo sapiens (human) ]

Gene ID: 26083, updated on 10-Dec-2024

Summary

Official Symbol
TBC1D29Pprovided by HGNC
Official Full Name
TBC1 domain family member 29, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:24509
See related
Ensembl:ENSG00000290404 AllianceGenome:HGNC:24509
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TBC1D29
Expression
Restricted expression toward testis (RPKM 3.5) See more
Orthologs
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Genomic context

See TBC1D29P in Genome Data Viewer
Location:
17q11.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (30559566..30563493)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (31504207..31508135)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (28886584..28890511)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene arachidonate 12-lipoxygenase pseudogene 1 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr17:28863435-28863984 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:28868427-28868928 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:28878036-28878566 Neighboring gene TBC1 domain family member 3 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:28892925-28893520 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:28893521-28894115 Neighboring gene SMURF2P1-LRRC37BP1 readthrough transcribed pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:28896451-28897128 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:28897129-28897806 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:28898485-28899162 Neighboring gene uncharacterized LOC101927093 Neighboring gene keratin 17 pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

General gene information

Markers

Other Names

  • TBC1 domain family, member 29
  • putative TBC1 domain family member 29

Clone Names

  • DKFZp434O047

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_172920.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011840
    Related
    ENST00000649411.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    30559566..30563493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    31504207..31508135
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_015594.2: Suppressed sequence

    Description
    NM_015594.2: This RefSeq was removed because it is now thought that this gene is a pseudogene.