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ap3m1 adaptor related protein complex 3 subunit mu 1 [ Danio rerio (zebrafish) ]

Gene ID: 266798, updated on 2-Nov-2024

Summary

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Official Symbol
ap3m1provided by ZNC
Official Full Name
adaptor related protein complex 3 subunit mu 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-021015-2
See related
Ensembl:ENSDARG00000029928 AllianceGenome:ZFIN:ZDB-GENE-021015-2
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cb430
Summary
Predicted to be involved in endocytosis. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus. Predicted to be part of clathrin adaptor complex. Predicted to be active in cytoplasmic vesicle. Is expressed in several structures, including digestive system; polster; pronephric duct; solid lens vesicle; and yolk syncytial layer. Orthologous to human AP3M1 (adaptor related protein complex 3 subunit mu 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

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See ap3m1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (25200105..25209072)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (25069604..25078622)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene K(lysine) acetyltransferase 6B Neighboring gene adenosine kinase a Neighboring gene vinculin a Neighboring gene plasminogen activator, urokinase a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Genetic characterization and in vivo image analysis of novel zebrafish Danio rerio pigment mutants. Hsu CC, et al. J Fish Biol, 2013 May. PMID 23639161
  2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in endocytosis IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
part_of clathrin adaptor complex IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytoplasmic vesicle IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
AP-3 complex subunit mu-1
Names
adaptor-related protein complex 3, mu 1 subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_201292.1 → NP_958449.1  AP-3 complex subunit mu-1

    See identical proteins and their annotated locations for NP_958449.1

    Status: PROVISIONAL

    Source sequence(s)
    AY394946
    UniProtKB/TrEMBL
    Q6TLF9
    Related
    ENSDARP00000039639.5, ENSDART00000039640.6
    Conserved Domains (2) summary
    cl02092
    Location:1 → 133
    Clat_adaptor_s; Clathrin adaptor complex small chain
    cl10970
    Location:165 → 421
    AP_MHD_Cterm; C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    25200105..25209072
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009307281.4 → XP_009305556.1  AP-3 complex subunit mu-1 isoform X1

    See identical proteins and their annotated locations for XP_009305556.1

    UniProtKB/TrEMBL
    A0A8M3B573, A9JRS9
    Conserved Domains (2) summary
    cl02092
    Location:1 → 133
    Clat_adaptor_s; Clathrin adaptor complex small chain
    cl10970
    Location:165 → 421
    AP_MHD_Cterm; C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD)
Nucleotide Protein Strain
Heading Accession and Version

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