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Ctif CBP80/20-dependent translation initiation factor [ Mus musculus (house mouse) ]

Gene ID: 269037, updated on 10-Oct-2024

Summary

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Official Symbol
Ctifprovided by MGI
Official Full Name
CBP80/20-dependent translation initiation factorprovided by MGI
Primary source
MGI:MGI:2685518
See related
Ensembl:ENSMUSG00000052928 AllianceGenome:MGI:2685518
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm672
Summary
Predicted to enable translation activator activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and regulation of translational initiation. Predicted to act upstream of or within regulation of translation. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in cytosol. Is expressed in central nervous system; ganglia; and neural retina. Orthologous to human CTIF (cap binding complex dependent translation initiation factor). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in whole brain E14.5 (RPKM 10.9), CNS E18 (RPKM 10.3) and 26 other tissues See more
Orthologs
human all
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Genomic context

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See Ctif in Genome Data Viewer
Location:
18 E3; 18 51.06 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (75564279..75830762, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (75431205..75697696, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_45059 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:75537151-75537467 Neighboring gene STARR-seq mESC enhancer starr_45061 Neighboring gene predicted gene 20544 Neighboring gene SMAD family member 7 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:75579115-75579397 Neighboring gene predicted gene, 41776 Neighboring gene STARR-seq mESC enhancer starr_45075 Neighboring gene predicted gene, 52357 Neighboring gene VISTA enhancers mm18 and mm257 Neighboring gene STARR-seq mESC enhancer starr_45078 Neighboring gene predicted gene 10532 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:75722201-75722354 Neighboring gene STARR-positive B cell enhancer ABC_E5665 Neighboring gene RIKEN cDNA 1700034B16 gene Neighboring gene thymosin, beta 10 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC67202

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables translation activator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay ISO
Inferred from Sequence Orthology
more info
  
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in regulation of translational initiation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of translational initiation ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of translational initiation ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in perinuclear region of cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
CBP80/20-dependent translation initiation factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001408302.1 → NP_001395231.1  CBP80/20-dependent translation initiation factor isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC113528, AC120156, AC120176

  2. NM_001408303.1 → NP_001395232.1  CBP80/20-dependent translation initiation factor isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC113528, AC120156, AC120176

  3. NM_001408304.1 → NP_001395233.1  CBP80/20-dependent translation initiation factor isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC113528, AC120156, AC120176

  4. NM_001408305.1 → NP_001395234.1  CBP80/20-dependent translation initiation factor isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC113528, AC120156, AC120176
    UniProtKB/TrEMBL
    E9Q1U6

  5. NM_001408306.1 → NP_001395235.1  CBP80/20-dependent translation initiation factor isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC113528, AC120156, AC120176
    UniProtKB/TrEMBL
    E9Q1U6

  6. NM_001408307.1 → NP_001395236.1  CBP80/20-dependent translation initiation factor isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC113528, AC120156, AC120176

  7. NM_201354.3 → NP_958742.2  CBP80/20-dependent translation initiation factor isoform 2

    See identical proteins and their annotated locations for NP_958742.2

    Status: VALIDATED

    Source sequence(s)
    AC113528, AC120156, AC120176
    Consensus CDS
    CCDS37861.1
    UniProtKB/Swiss-Prot
    Q6A069, Q6PEE2
    UniProtKB/TrEMBL
    E9Q1U6
    Related
    ENSMUSP00000129974.2, ENSMUST00000165559.3
    Conserved Domains (2) summary
    PTZ00449
    Location:259 → 395
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    pfam02854
    Location:402 → 602
    MIF4G; MIF4G domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    75564279..75830762 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006525968.4 → XP_006526031.1  CBP80/20-dependent translation initiation factor isoform X1

    See identical proteins and their annotated locations for XP_006526031.1

    UniProtKB/Swiss-Prot
    Q6A069, Q6PEE2
    UniProtKB/TrEMBL
    E9Q1U6
    Conserved Domains (2) summary
    PTZ00449
    Location:259 → 395
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    pfam02854
    Location:402 → 602
    MIF4G; MIF4G domain

  2. XM_036161162.1 → XP_036017055.1  CBP80/20-dependent translation initiation factor isoform X1

    UniProtKB/Swiss-Prot
    Q6A069, Q6PEE2
    UniProtKB/TrEMBL
    E9Q1U6
    Conserved Domains (2) summary
    PTZ00449
    Location:259 → 395
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    pfam02854
    Location:402 → 602
    MIF4G; MIF4G domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6PEE2.2 GenPept UniProtKB/Swiss-Prot:Q6PEE2

Gene LinkOut

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