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SUGT1P3 SUGT1 pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 283507, updated on 22-Oct-2024

Summary

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Official Symbol
SUGT1P3provided by HGNC
Official Full Name
SUGT1 pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:20513
See related
Ensembl:ENSG00000290476 AllianceGenome:HGNC:20513
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SUGT1L1
Expression
Ubiquitous expression in thyroid (RPKM 1.6), brain (RPKM 0.7) and 23 other tissues See more
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Genomic context

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See SUGT1P3 in Genome Data Viewer
Location:
13q14.11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (40911887..40921774, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (40130853..40140745, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (41486023..41495910, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 15 Neighboring gene TPTE2 pseudogene 5 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:41402397-41402543 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:41402827-41403328 Neighboring gene microRNA 621 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:41443930-41444430 Neighboring gene CYCS pseudogene 34 Neighboring gene SUGT1P3 overlapping homotypic cluster of transcription factor binding sites enhancer Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:41495859-41496445 Neighboring gene Sharpr-MPRA regulatory region 5240 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7618 Neighboring gene E74 like ETS transcription factor 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7619 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:41552261-41552452 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7620 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7621 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:41567027-41567568 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:41567569-41568109 Neighboring gene regulator of G protein signaling 17 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7623 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7624 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5288 Neighboring gene tRNA-Glu (anticodon TTC) 1-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • SGT1 homolog, MIS12 kinetochore complex assembly cochaperone pseudogene 3
  • SGT1, suppressor of G2 allele of SKP1 like 1
  • suppressor of G2 allele of SKP1 pseudogene 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003365.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL157877, BC020814
    Related
    ENST00000304932.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    40911887..40921774 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    40130853..40140745 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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