U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC00908 long intergenic non-protein coding RNA 908 [ Homo sapiens (human) ]

Gene ID: 284276, updated on 10-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
LINC00908provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 908provided by HGNC
Primary source
HGNC:HGNC:27599
See related
Ensembl:ENSG00000266256 AllianceGenome:HGNC:27599
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ASRPS; LINC00683; LINC01879
Expression
Biased expression in ovary (RPKM 3.3), endometrium (RPKM 1.5) and 10 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LINC00908 in Genome Data Viewer
Location:
18q23
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (76528655..76559827)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (76757470..76788593)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (74240612..74271784)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 516 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13508 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13509 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9555 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9556 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9557 Neighboring gene ZNF516 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13510 Neighboring gene ZNF516 divergent transcript Neighboring gene Sharpr-MPRA regulatory region 8201 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74240354-74240994 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74240995-74241633 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74241634-74242273 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74323725-74324238 Neighboring gene long intergenic non-protein coding RNA 683 Neighboring gene long intergenic non-protein coding RNA 1927 Neighboring gene uncharacterized LOC107985151 Neighboring gene NANOG hESC enhancer GRCh37_chr18:74370664-74371165

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. LINC00908 negatively regulates microRNA-483-5p to increase TSPYL5 expression and inhibit the development of prostate cancer. Fan L, et al. Cancer Cell Int, 2020. PMID 31938018, Free PMC Article
  2. LncRNA-encoded polypeptide ASRPS inhibits triple-negative breast cancer angiogenesis. Wang Y, et al. J Exp Med, 2020 Mar 2. PMID 31816634, Free PMC Article
  3. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Other Names

  • a small regulatory peptide of STAT3
  • long intergenic non-protein coding RNA 1879
  • long intergenic non-protein coding RNA 683

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015417.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK093936, BC035336, BC121150
    Related
    ENST00000578613.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    76528655..76559827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    76757470..76788593
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials