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Tmem242 transmembrane protein 242 [ Rattus norvegicus (Norway rat) ]

Gene ID: 292228, updated on 10-Jul-2024

Summary

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Official Symbol
Tmem242provided by RGD
Official Full Name
transmembrane protein 242provided by RGD
Primary source
RGD:1307262
See related
EnsemblRapid:ENSRNOG00000016973 AllianceGenome:RGD:1307262
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
C1H6orf35; RGD1307262
Summary
Predicted to be integral component of membrane. Orthologous to human TMEM242 (transmembrane protein 242). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Heart (RPKM 244.8), Kidney (RPKM 155.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Tmem242 in Genome Data Viewer
Location:
1q11
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (48397865..48424639, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (45992713..46019684, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (46302546..46329885, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134484862 Neighboring gene AT-rich interaction domain 1B Neighboring gene lactate dehydrogenase A-like 6B Neighboring gene uncharacterized LOC120099115 Neighboring gene zinc finger DHHC-type palmitoyltransferase 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in mitochondrial proton-transporting ATP synthase complex assembly ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in mitochondrial inner membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
transmembrane protein 242

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001144860.2 → NP_001138332.1  transmembrane protein 242

    See identical proteins and their annotated locations for NP_001138332.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A6KNY7, D4A7K0
    Related
    ENSRNOP00000047116.3, ENSRNOT00000046311.5
    Conserved Domains (1) summary
    pfam07096
    Location:15 → 123
    DUF1358; Protein of unknown function (DUF1358)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    48397865..48424639 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039103364.2 → XP_038959292.1  transmembrane protein 242 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZNB1
    Conserved Domains (1) summary
    pfam07096
    Location:15 → 108
    DUF1358; Protein of unknown function (DUF1358)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Chemical Information
Molecular Biology Databases
Research Materials