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UL42 DNA polymerase processivity subunit [ Suid alphaherpesvirus 1 ]

Gene ID: 2952523, updated on 21-Dec-2023

Summary

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Gene symbol
UL42
Gene description
DNA polymerase processivity subunit
Locus tag
SuHV1_gp28
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Suid alphaherpesvirus 1 (strain: Composite of 6 strains, acronym: PRV, acronym: SuHV-1, nat-host: Sus scrofa)
Lineage
Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Alphaherpesvirinae; Varicellovirus
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Genomic context

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Sequence:
NC_006151.1 (51526..52800)

NC_006151.1Genomic Context describing neighboring genes Neighboring gene tegument protein UL37 Neighboring gene capsid triplex subunit 1 Neighboring gene ribonucleotide reductase subunit 1 Neighboring gene ribonucleotide reductase subunit 2 Neighboring gene tegument host shutoff protein Neighboring gene envelope protein UL43 Neighboring gene envelope glycoprotein C Neighboring gene capsid scaffold protein Neighboring gene capsid maturation protease Neighboring gene DNA packaging tegument protein UL25 Neighboring gene nuclear protein UL24

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_006151.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Suppression of NF-κB signaling by Pseudorabies virus DNA polymerase processivity factor UL42 via recruiting SOCS1 to promote the ubiquitination degradation of p65. Bo Z, et al. Vet Microbiol, 2023 Dec. PMID 37931575
  2. Complete, annotated sequence of the pseudorabies virus genome. Klupp BG, et al. J Virol, 2004 Jan. PMID 14671123, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Suppression of NF-kappaB signaling by Pseudorabies virus DNA polymerase processivity factor UL42 via recruiting SOCS1 to promote the ubiquitination degradation of p65.
    Title: Suppression of NF-κB signaling by Pseudorabies virus DNA polymerase processivity factor UL42 via recruiting SOCS1 to promote the ubiquitination degradation of p65.
Submit: New GeneRIF Correction

General gene information

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Homology

Miscellaneous features

  • Loc: 51541-51541 transcriptional initiation site inference = ab initio prediction:NNPP:
  • Loc: 51556-51556 transcriptional initiation site inference = ab initio prediction:NNPP:
  • Loc: 51596-51596 transcriptional initiation site inference = ab initio prediction:NNPP:

polyA_site

  • Loc: 52800-52800 experiment = cDNA sequence in strain TNL

regulatory

  • Loc: 51526-51532 inference = ab initio prediction:TRANSFACFind: , regulatory_class = TATA_box
  • Loc: 51564-51570 inference = ab initio prediction:TRANSFACFind: , regulatory_class = TATA_box
  • Loc: 52781-52786 experiment = consistent with mRNA size (sense unknown) in strain Ka , inference = ab initio prediction:PolyADQ: , regulatory_class = polyA_signal_sequence

General protein information

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Preferred Names
DNA polymerase processivity subunit

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006151.1 Reference assembly

    Range
    51526..52800
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_068345.1 DNA polymerase processivity subunit [Suid alphaherpesvirus 1]

    See identical proteins and their annotated locations for YP_068345.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P36702
    UniProtKB/TrEMBL
    A0A0S2MLY5, G3G966, Q5PPB4
    Conserved Domains (1) summary
    pfam02282
    Location:69 → 182
    Herpes_UL42; DNA polymerase processivity factor (UL42)
Nucleotide Protein
Heading Accession and Version

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