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UL18 capsid triplex subunit 2 [ Suid alphaherpesvirus 1 ]

Gene ID: 2952544, updated on 18-Aug-2023

Summary

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Gene symbol
UL18
Gene description
capsid triplex subunit 2
Locus tag
SuHV1_gp40
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Suid alphaherpesvirus 1 (strain: Composite of 6 strains, acronym: PRV, acronym: SuHV-1, nat-host: Sus scrofa)
Lineage
Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Alphaherpesvirinae; Varicellovirus
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Genomic context

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Sequence:
NC_006151.1 (70837..71846)

NC_006151.1Genomic Context describing neighboring genes Neighboring gene thymidine kinase Neighboring gene envelope glycoprotein H Neighboring gene tegument protein UL21 Neighboring gene envelope protein UL20 Neighboring gene major capsid protein Neighboring gene DNA packaging terminase subunit 1 Neighboring gene DNA packaging tegument protein UL17 Neighboring gene tegument protein UL16 Neighboring gene tegument protein UL14 Neighboring gene tegument serine/threonine protein kinase Neighboring gene deoxyribonuclease Neighboring gene myristylated tegument protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_006151.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete, annotated sequence of the pseudorabies virus genome. Klupp BG, et al. J Virol, 2004 Jan. PMID 14671123, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Miscellaneous features

  • Loc: 70867-70867 transcriptional initiation site inference = ab initio prediction:NNPP:

polyA_site

  • Loc: 70857-70857 experiment = cDNA sequence in strain Indiana S

regulatory

  • Loc: 70837-70843 inference = ab initio prediction:TRANSFACFind: , regulatory_class = TATA_box
  • Loc: 70838-70844 experiment = consistent with mRNA size (sense unknown) in strain Indiana S , inference = ab initio prediction:PolyADQ: , regulatory_class = polyA_signal_sequence
  • Loc: 71841-71846 experiment = consistent with mRNA size (sense unknown) in strain NIA-3 , inference = ab initio prediction:PolyADQ: , regulatory_class = polyA_signal_sequence

General protein information

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Preferred Names
capsid triplex subunit 2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006151.1 Reference assembly

    Range
    70837..71846
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_068357.1 capsid triplex subunit 2 [Suid alphaherpesvirus 1]

    See identical proteins and their annotated locations for YP_068357.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A097I4M5, Q04530, Q5PPE6
    Conserved Domains (1) summary
    PHA03257
    Location:1 → 295
    PHA03257; Capsid triplex subunit 2; Provisional
Nucleotide Protein
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