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UL6 capsid portal protein [ Suid alphaherpesvirus 1 ]

Gene ID: 2952550, updated on 18-Aug-2023

Summary

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Gene symbol
UL6
Gene description
capsid portal protein
Locus tag
SuHV1_gp52
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Suid alphaherpesvirus 1 (strain: Composite of 6 strains, acronym: PRV, acronym: SuHV-1, nat-host: Sus scrofa)
Lineage
Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Alphaherpesvirinae; Varicellovirus
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Genomic context

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Sequence:
NC_006151.1 (86527..89301, complement)

NC_006151.1Genomic Context describing neighboring genes Neighboring gene envelope glycoprotein M Neighboring gene DNA replication origin-binding helicase Neighboring gene helicase-primase subunit Neighboring gene tegument protein UL7 Neighboring gene helicase-primase helicase subunit Neighboring gene nuclear protein UL4 Neighboring gene protein V57 Neighboring gene nuclear protein UL3 Neighboring gene uracil-DNA glycosylase Neighboring gene envelope glycoprotein L

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_006151.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete, annotated sequence of the pseudorabies virus genome. Klupp BG, et al. J Virol, 2004 Jan. PMID 14671123, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

regulatory

  • Loc: c86532-86527 experiment = consistent with mRNA sizes (sense unknown) in strain Ka , inference = ab initio prediction:PolyADQ: , regulatory_class = polyA_signal_sequence
  • Loc: c87567-87561 inference = ab initio prediction:TRANSFACFind: , regulatory_class = TATA_box
  • Loc: c89241-89235 inference = ab initio prediction:TRANSFACFind: , regulatory_class = TATA_box

General protein information

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Preferred Names
capsid portal protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006151.1 Reference assembly

    Range
    86527..89301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_068370.1 capsid portal protein [Suid alphaherpesvirus 1]

    See identical proteins and their annotated locations for YP_068370.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0S2MM20, A0A2C9C2T9, G3G910, Q5PPD5, Q85050
    Conserved Domains (1) summary
    pfam01763
    Location:40 → 595
    Herpes_UL6; Herpesvirus UL6 like
Nucleotide Protein
Heading Accession and Version

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