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UL23 thymidine kinase [ Suid alphaherpesvirus 1 ]

Gene ID: 2952559, updated on 18-Aug-2023

Summary

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Gene symbol
UL23
Gene description
thymidine kinase
Locus tag
SuHV1_gp35
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Suid alphaherpesvirus 1 (strain: Composite of 6 strains, acronym: PRV, acronym: SuHV-1, nat-host: Sus scrofa)
Lineage
Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Alphaherpesvirinae; Varicellovirus
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Genomic context

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Sequence:
NC_006151.1 (59512..60590)

NC_006151.1Genomic Context describing neighboring genes Neighboring gene envelope protein UL43 Neighboring gene envelope glycoprotein C Neighboring gene capsid scaffold protein Neighboring gene capsid maturation protease Neighboring gene DNA packaging tegument protein UL25 Neighboring gene nuclear protein UL24 Neighboring gene envelope glycoprotein H Neighboring gene tegument protein UL21 Neighboring gene envelope protein UL20 Neighboring gene major capsid protein Neighboring gene capsid triplex subunit 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_006151.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete, annotated sequence of the pseudorabies virus genome. Klupp BG, et al. J Virol, 2004 Jan. PMID 14671123, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Miscellaneous features

  • Loc: 59633-59633 transcriptional initiation site inference = ab initio prediction:NNPP:
  • Loc: 59732-60503 derived from strain NIA-3
  • Loc: 60589-60589 UL22 experiment = approximation (+/- 1 nt) of transcriptional initation site from primer extension in strain Ka
  • Loc: 60590-60590 transcriptional initiation site inference = ab initio prediction:NNPP:

regulatory

  • Loc: 60560-60566 inference = ab initio prediction:TRANSFACFind: , regulatory_class = TATA_box
  • Loc: 60585-60590 experiment = consistent with mRNA size (sense unknown) in strain Ka , inference = ab initio prediction:PolyADQ: , regulatory_class = polyA_signal_sequence

General protein information

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Preferred Names
thymidine kinase
YP_068352.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006151.1 Reference assembly

    Range
    59512..60590
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_068352.1 thymidine kinase [Suid alphaherpesvirus 1]

    See identical proteins and their annotated locations for YP_068352.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0S2MM51, A0A142I9U6, A0A411IL34, Q5PPA7
    Conserved Domains (1) summary
    PHA03134
    Location:1 → 320
    PHA03134; thymidine kinase; Provisional
Nucleotide Protein
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